CuGenDBv2

Gene ID	Spg030178
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Genome location	scaffold6:14602052..14603183
RNA-Seq Expression	Spg030178
Synteny	Spg030178
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035913.1 retrotransposon protein [Cucumis melo var. makuwa]

6.6e-23

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Query:  MGMDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED
        M MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL VVLRL+  L+K P P+TS C D RW  FE+
Subjt:  MGMDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED

KAA0036694.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-22

62.24

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED
        MD R++ A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL  VLRL+  L+K P P+TS C D RW  FE+
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED

KAA0048383.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-22

62.24

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED
        MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL V+LRL+  L+K P P+TS C D RW  FE+
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED

KAA0054337.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-22

61.86

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFE
        MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN++L  VLRL+  L+K P P+TS C D RW  FE
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFE

KAA0066207.1 retrotransposon protein [Cucumis melo var. makuwa]

3.8e-23

61.76

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFEDQC
        MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL  VLRL+  L+K P P+TS C D RW RFE+  
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFEDQC

Query:  SS
        S+
Subjt:  SS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZ61 Retrotransposon protein

3.2e-23

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Query:  MGMDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED
        M MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL VVLRL+  L+K P P+TS C D RW  FE+
Subjt:  MGMDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED

A0A5A7SZH3 Retrotransposon protein

1.2e-22

62.24

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED
        MD R++ A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL  VLRL+  L+K P P+TS C D RW  FE+
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED

A0A5A7TXM1 Retrotransposon protein

9.3e-23

62.24

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED
        MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL V+LRL+  L+K P P+TS C D RW  FE+
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFED

A0A5A7UID8 Retrotransposon protein

1.2e-22

61.86

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFE
        MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN++L  VLRL+  L+K P P+TS C D RW  FE
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFE

A0A5A7VGK1 Retrotransposon protein

1.9e-23

61.76

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Query:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFEDQC
        MD R+  A   HL      L  T  VDVEEMVAMFLH++AHDVKNRVI R+FVRSGETVSRHFN+VL  VLRL+  L+K P P+TS C D RW RFE+  
Subjt:  MDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFEDQC

Query:  SS
        S+
Subjt:  SS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G43722.1 unknown protein

9.5e-04

40.32

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Query:  LQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTP
        LQ T  + +EE VAMFL I  H+   R +  +F R+ ETV R F  VL     L    ++TP
Subjt:  LQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTP

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

3.2e-07

44.44

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Query:  LQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRL
        L+ TN + +E  +A+FL II H+++ R +   F  SGET+SRHFN VL+ V+ +
Subjt:  LQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRL

Sequences

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CDS sequence

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ATGGGAATGGACAACCGTTCGATGGATGCAGGAGAACTTCACCTTCGCCCTACCTATCGGAGATTACAAGTCACTAATTACGTGGATGTGGAGGAGATGGTTGCAATGTT
CCTCCACATCATTGCGCACGACGTCAAGAATCGAGTAATTTGTCGCCAATTCGTGCGTTCAGGAGAGACCGTATCTAGGCACTTCAATGTTGTCTTGGATGTGGTACTTC
GATTACATACAATCCTATTGAAAACACCTGAACCCATTACGAGTACGTGCGCAGACAATAGATGGAATCGGTTTGAGGATCAATGTTCAAGTAACAACCTAAAAGGTCTA
TCGTATAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAGGCATCCATGTAGGAGACATGCG
GGAGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTAACCACTAG

mRNA sequence

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Protein sequence

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MGMDNRSMDAGELHLRPTYRRLQVTNYVDVEEMVAMFLHIIAHDVKNRVICRQFVRSGETVSRHFNVVLDVVLRLHTILLKTPEPITSTCADNRWNRFEDQCSSNNLKGL
SYRDKAGYLILVTLCDTTHLVFDTDAMIQGIHVGDMREGVSYAMSLHKTGPRNSNH

Spg030178 (gene) of Sponge gourd (cylindrica) v1 genome