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Spg030216 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030216
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold6:15217240..15227009
RNA-Seq ExpressionSpg030216
SyntenySpg030216
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]1.4e-1176.6Show/hide
Query:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR
        MRD PLICTGESG   DSI L F GQDRLGSWEH+ TRWN LLP FR
Subjt:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.1e-0868.89Show/hide
Query:  DFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR
        D PLI T ESG   DS+ L FWGQDR+ SWEH+ TRWNSLLP FR
Subjt:  DFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR

KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-0552.94Show/hide
Query:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH
        F G  +++ + D   + +RD PLICTGESG   DSI L FWGQDR+G W+H
Subjt:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-1170.21Show/hide
Query:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR
        +RD PL CTGESG   DSI L FWGQDR+GSWEH+ TRWNS +P FR
Subjt:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR

TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]2.6e-0552.94Show/hide
Query:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH
        F G  +++ + D   + +RD PLICTGESG   DSI L FWGQDR+G W+H
Subjt:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein6.9e-1276.6Show/hide
Query:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR
        MRD PLICTGESG   DSI L F GQDRLGSWEH+ TRWN LLP FR
Subjt:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR

A0A5A7U202 Reverse transcriptase1.3e-0552.94Show/hide
Query:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH
        F G  +++ + D   + +RD PLICTGESG   DSI L FWGQDR+G W+H
Subjt:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH

A0A5A7U2P4 Integrase catalytic domain-containing protein5.5e-0968.89Show/hide
Query:  DFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR
        D PLI T ESG   DS+ L FWGQDR+ SWEH+ TRWNSLLP FR
Subjt:  DFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR

A0A5D3C3J6 Gag/pol protein1.5e-1170.21Show/hide
Query:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR
        +RD PL CTGESG   DSI L FWGQDR+GSWEH+ TRWNS +P FR
Subjt:  MRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFR

A0A5D3CBX3 Reverse transcriptase1.3e-0552.94Show/hide
Query:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH
        F G  +++ + D   + +RD PLICTGESG   DSI L FWGQDR+G W+H
Subjt:  FGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCACGATGGCGGCACGAATTAGGACTTCAACAAGGCGCGGTTCAGCAGGTGGGTGGTCCGATTCGCTCAGTTCGGCTGGGCTGGGACCAATTTGGTCCGGTTCA
GCTAGATTTTGACTTGGTTCGTGATTTTGGTGGTCGGTTCAAGGCGGTTCGGGTCGTGGATTATGGACTCCTGTCCATGAGGGATTTTCCTTTGATTTGTACGGGTGAGA
GTGGCCTGTTCACCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGATTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGTA
AGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTAGGGGCGTTGAGCGATTTTCCCCGTGAGAATACCGGTGACGATTTTGTGGTTGTGTCCATAAAATTCCAGCAAGT
TCAAGGACTGTTGCTGCTGTTTTTGGGAGAAGAAACGAAGGCGCGGTTCAAGCTGTGGGCGGTCCGGTTCAGACCGGTTCGGCTGGGCTGGGACCTATTTGGTCCGGTTC
AGCCAACTTTTGGCATGGTTCGTGATTTTGGAGGCCGGTTCGAGGTGGTTCGGGGCGGTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCACGATGGCGGCACGAATTAGGACTTCAACAAGGCGCGGTTCAGCAGGTGGGTGGTCCGATTCGCTCAGTTCGGCTGGGCTGGGACCAATTTGGTCCGGTTCA
GCTAGATTTTGACTTGGTTCGTGATTTTGGTGGTCGGTTCAAGGCGGTTCGGGTCGTGGATTATGGACTCCTGTCCATGAGGGATTTTCCTTTGATTTGTACGGGTGAGA
GTGGCCTGTTCACCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGATTGGGGAGCTGGGAACATAGTCTTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGTA
AGTAGAGGTCCATTAGGTCCCACCGGTAGCTCATTAGGGGCGTTGAGCGATTTTCCCCGTGAGAATACCGGTGACGATTTTGTGGTTGTGTCCATAAAATTCCAGCAAGT
TCAAGGACTGTTGCTGCTGTTTTTGGGAGAAGAAACGAAGGCGCGGTTCAAGCTGTGGGCGGTCCGGTTCAGACCGGTTCGGCTGGGCTGGGACCTATTTGGTCCGGTTC
AGCCAACTTTTGGCATGGTTCGTGATTTTGGAGGCCGGTTCGAGGTGGTTCGGGGCGGTTCGTGA
Protein sequenceShow/hide protein sequence
MLPRWRHELGLQQGAVQQVGGPIRSVRLGWDQFGPVQLDFDLVRDFGGRFKAVRVVDYGLLSMRDFPLICTGESGLFTDSISLPFWGQDRLGSWEHSLTRWNSLLPDFRV
SRGPLGPTGSSLGALSDFPRENTGDDFVVVSIKFQQVQGLLLLFLGEETKARFKLWAVRFRPVRLGWDLFGPVQPTFGMVRDFGGRFEVVRGGS