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Spg030217 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030217
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold6:13960230..13963317
RNA-Seq ExpressionSpg030217
SyntenySpg030217
Gene Ontology termsNA
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577374.1 RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]2.0e-3663.57Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRANGGTTTT--------VDLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAI
        M IIVIFG FL +LV ++FF LCLYIC QCYNHGF E D     +G +TTT        VD  E+NR  +IAMEKLTKPS +YDYE+++EA S LS+CAI
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRANGGTTTT--------VDLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAI

Query:  CLEEFGNRASCRVFPNCKHMFHTHCIISW
        CLEEF N   CRVFPNCKHMFHTHCI+ W
Subjt:  CLEEFGNRASCRVFPNCKHMFHTHCIISW

KAG6600728.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]8.2e-3564.89Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSIDYDYEEND--EAPSELSEC
        MPIIV+FGF LTVLV  SFF LC+YIC QC+  GF  A +T R NG G  T       TV+ EELN QT   MEKLT P +DY  +END   A SEL+EC
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSIDYDYEEND--EAPSELSEC

Query:  AICLEEFGNRASCRVFPNCKHMFHTHCIISW
        AICLE FGNR SCRVFPNCKHMFHTHCII W
Subjt:  AICLEEFGNRASCRVFPNCKHMFHTHCIISW

KAG7031368.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-3564.89Show/hide
Query:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSIDYDYEEND--EAPSELSEC
        MPIIV+FGF LTVLV  SFF LC+YIC QC+  GF  A +T R NG G  T       TV+ EELN QT   MEKLT P +DY  +END   A SEL+EC
Subjt:  MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSIDYDYEEND--EAPSELSEC

Query:  AICLEEFGNRASCRVFPNCKHMFHTHCIISW
        AICLE FGNR SCRVFPNCKHMFHTHCII W
Subjt:  AICLEEFGNRASCRVFPNCKHMFHTHCIISW

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]2.2e-2458.41Show/hide
Query:  ICLQ-------CYNH-GFTEADRTGRANGG---TTTTV------DLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRASCRVFPN
        ICL+       C N  GF+E+++ G  N     TTTTV      D EE NRQ ++AMEKLTKPS  Y+ EENDE+PS LSEC ICLE+ G R SCRVFPN
Subjt:  ICLQ-------CYNH-GFTEADRTGRANGG---TTTTV------DLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRASCRVFPN

Query:  CKHMFHTHCIISW
        CKH+FHTHCII+W
Subjt:  CKHMFHTHCIISW

XP_023545744.1 RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]1.4e-2163.27Show/hide
Query:  GFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSIDYDYEEND--EAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        GF  A +T R NG G  T       TV+ EELN Q   AMEKLT P +DY  +END   A SEL+ECAICLE FGNR SCRVFPNCKHMFHTHCII W
Subjt:  GFTEADRTGRANG-GTTT-------TVDLEELNRQTRIAMEKLTKPSIDYDYEEND--EAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

TrEMBL top hitse value%identityAlignment
A0A0A0L7Y8 RING-type domain-containing protein3.3e-2174.24Show/hide
Query:  ELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        E NRQ ++AMEKLTKPS  Y+ EENDE+PS LSEC ICLE+ G R SCRVFPNCKH+FHTHCII+W
Subjt:  ELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

A0A5D2NVU2 RING-type E3 ubiquitin transferase2.7e-0757.78Show/hide
Query:  YEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        YEE ++  S+ SEC ICLEEF     CRV PNCKH +H HCI  W
Subjt:  YEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

A0A6A4LGK1 Uncharacterized protein (Fragment)1.6e-0733.88Show/hide
Query:  VIFGFFLTVLVFISFFGL--CLYICLQCYNHGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTK-PSIDYDYEENDEA-PSELSECAICLEEFGNR
        ++   FL+VL F    G+   +++CL         A R G  +    T V     +R+  ++++ + K PS DY  EE +    S+  ECA+CLE F   
Subjt:  VIFGFFLTVLVFISFFGL--CLYICLQCYNHGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTK-PSIDYDYEENDEA-PSELSECAICLEEFGNR

Query:  ASCRVFPNCKHMFHTHCIISW
          CR+ PNC+H +H HCI SW
Subjt:  ASCRVFPNCKHMFHTHCIISW

A0A7J8N2H5 RING-type E3 ubiquitin transferase9.2e-0860Show/hide
Query:  YEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        YEE ++  S+ SECAICLEEF     CRV PNCKH +H HCI  W
Subjt:  YEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

A0A7J9MHG3 RING-type E3 ubiquitin transferase9.2e-0860Show/hide
Query:  YEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        YEE ++  S+ SECAICLEEF     CRV PNCKH +H HCI  W
Subjt:  YEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

SwissProt top hitse value%identityAlignment
Q8LF65 RING-H2 finger protein ATL173.7e-0660.61Show/hide
Query:  ECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        EC++CL EF +  S RV PNCKH FH HCI  W
Subjt:  ECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

Q9C919 Putative RING-H2 finger protein ATL196.4e-0645.65Show/hide
Query:  DYEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        ++EE++E   E  ECAICL  +     CRVFP C+H++H  CI +W
Subjt:  DYEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

Q9LF64 RING-H2 finger protein ATL521.6e-0427.5Show/hide
Query:  IIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRAN-GGTTTTVDLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRA
        +I + G   + L+ +S++ L   I   C+ H  T +  T   N  G       + ++       E + K    Y Y+  D    + S+C++CL EF    
Subjt:  IIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRAN-GGTTTTVDLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRA

Query:  SCRVFPNCKHMFHTHCIISW
        S R+ P C H FH  CI +W
Subjt:  SCRVFPNCKHMFHTHCIISW

Q9LX93 E3 ubiquitin-protein ligase RING12.4e-0540Show/hide
Query:  SECAICLEEFGNRASCRVFPNCKHMFHTHCIISWSLDMKNEDRNKLSLASSTETP
        +EC++CL EF    S R+ P C H FH +CI +W L  KN    +  +   TE P
Subjt:  SECAICLEEFGNRASCRVFPNCKHMFHTHCIISWSLDMKNEDRNKLSLASSTETP

Arabidopsis top hitse value%identityAlignment
AT1G53010.1 RING/U-box superfamily protein4.5e-0745.65Show/hide
Query:  DYEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        ++EE++E   E  ECAICL  +     CRVFP C+H++H  CI +W
Subjt:  DYEENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

AT4G15975.1 RING/U-box superfamily protein2.9e-0657.58Show/hide
Query:  ECAICLEEFGNRASCRVFPNCKHMFHTHCIISW
        EC++CL EF +  S RV PNCKH FH  CI  W
Subjt:  ECAICLEEFGNRASCRVFPNCKHMFHTHCIISW

AT5G10380.1 RING/U-box superfamily protein1.7e-0640Show/hide
Query:  SECAICLEEFGNRASCRVFPNCKHMFHTHCIISWSLDMKNEDRNKLSLASSTETP
        +EC++CL EF    S R+ P C H FH +CI +W L  KN    +  +   TE P
Subjt:  SECAICLEEFGNRASCRVFPNCKHMFHTHCIISWSLDMKNEDRNKLSLASSTETP

AT5G17600.1 RING/U-box superfamily protein1.1e-0527.5Show/hide
Query:  IIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRAN-GGTTTTVDLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRA
        +I + G   + L+ +S++ L   I   C+ H  T +  T   N  G       + ++       E + K    Y Y+  D    + S+C++CL EF    
Subjt:  IIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRAN-GGTTTTVDLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRA

Query:  SCRVFPNCKHMFHTHCIISW
        S R+ P C H FH  CI +W
Subjt:  SCRVFPNCKHMFHTHCIISW

AT5G43420.1 RING/U-box superfamily protein5.0e-0635.38Show/hide
Query:  EENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISWSLDMKNEDRNKLSLASSTETP
        EE +E  S+  EC++CL EF +    R+ PNC H+FH  CI  W  +  N    +  ++  T  P
Subjt:  EENDEAPSELSECAICLEEFGNRASCRVFPNCKHMFHTHCIISWSLDMKNEDRNKLSLASSTETP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATAATCGTCATCTTTGGCTTCTTCTTGACAGTTTTGGTATTCATCTCCTTCTTCGGCTTGTGCCTCTACATTTGTCTCCAATGCTACAACCATGGGTTCACGGA
GGCCGATCGAACCGGCCGTGCAAATGGAGGAACGACGACGACGGTGGACCTTGAGGAACTGAATCGACAAACTCGAATAGCGATGGAGAAGTTGACGAAGCCGTCGATAG
ATTATGATTACGAGGAGAACGATGAAGCTCCATCGGAGTTGAGCGAATGTGCGATATGTTTGGAGGAGTTTGGGAATAGAGCTTCATGTCGAGTCTTCCCCAATTGCAAG
CATATGTTTCATACGCATTGCATAATCAGCTGGAGTCTAGATATGAAGAACGAAGATAGAAACAAGCTCAGCCTGGCTAGTTCGACTGAGACACCCCAAGGTGGGAAAAT
GGTGAAATCTCTACAAACACGAGGTCCTCAGCAGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACTGGAGAGTAAAATGACCATTATACCCTTGGAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCATAATCGTCATCTTTGGCTTCTTCTTGACAGTTTTGGTATTCATCTCCTTCTTCGGCTTGTGCCTCTACATTTGTCTCCAATGCTACAACCATGGGTTCACGGA
GGCCGATCGAACCGGCCGTGCAAATGGAGGAACGACGACGACGGTGGACCTTGAGGAACTGAATCGACAAACTCGAATAGCGATGGAGAAGTTGACGAAGCCGTCGATAG
ATTATGATTACGAGGAGAACGATGAAGCTCCATCGGAGTTGAGCGAATGTGCGATATGTTTGGAGGAGTTTGGGAATAGAGCTTCATGTCGAGTCTTCCCCAATTGCAAG
CATATGTTTCATACGCATTGCATAATCAGCTGGAGTCTAGATATGAAGAACGAAGATAGAAACAAGCTCAGCCTGGCTAGTTCGACTGAGACACCCCAAGGTGGGAAAAT
GGTGAAATCTCTACAAACACGAGGTCCTCAGCAGAGCTTTGGAAGCAATTCGGGGCTTAAACGAGCGAAACTGGAGAGTAAAATGACCATTATACCCTTGGAGCCTTGA
Protein sequenceShow/hide protein sequence
MPIIVIFGFFLTVLVFISFFGLCLYICLQCYNHGFTEADRTGRANGGTTTTVDLEELNRQTRIAMEKLTKPSIDYDYEENDEAPSELSECAICLEEFGNRASCRVFPNCK
HMFHTHCIISWSLDMKNEDRNKLSLASSTETPQGGKMVKSLQTRGPQQSFGSNSGLKRAKLESKMTIIPLEP