; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030241 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030241
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpentatricopeptide repeat-containing protein At5g15010, mitochondrial-like
Genome locationscaffold6:14870462..14876144
RNA-Seq ExpressionSpg030241
SyntenySpg030241
Gene Ontology termsNA
InterPro domainsIPR002885 - Pentatricopeptide repeat


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020705.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-3371.79Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKN----------SRLFPKKIDLKIDFHRQPE
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVL+AWLAGKP+IQG+M+G SEN S+  GE KN          S+LFPK    KIDFHRQPE
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKN----------SRLFPKKIDLKIDFHRQPE

Query:  IRK-----VHDINRSFE
        IRK     VHD NRS E
Subjt:  IRK-----VHDINRSFE

XP_022145432.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia]1.2e-3786.17Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQG+ +GLSENQS+C GE KNSR  PKKID KIDF RQPE+R+V
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV

XP_022924384.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucurbita moschata]2.6e-3279.79Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVL+AWLAGKP+IQG+M+G SEN S+  GE KNS    K    KIDFHRQPEIRKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV

XP_022979235.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima]1.5e-3281.25Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVL+AWLAGKP+IQG+M+G SEN S+  GE K  NS+LFPK    KIDFHRQPEIRKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV

XP_022979239.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X2 [Cucurbita maxima]1.5e-3281.25Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVL+AWLAGKP+IQG+M+G SEN S+  GE K  NS+LFPK    KIDFHRQPEIRKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV

TrEMBL top hitse value%identityAlignment
A0A6J1CVY6 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like5.8e-3886.17Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQG+ +GLSENQS+C GE KNSR  PKKID KIDF RQPE+R+V
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV

A0A6J1E902 pentatricopeptide repeat-containing protein At5g15010, mitochondrial1.3e-3279.79Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVL+AWLAGKP+IQG+M+G SEN S+  GE KNS    K    KIDFHRQPEIRKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV

A0A6J1EMH0 uncharacterized protein LOC1114358674.2e-2870.09Show/hide
Query:  MAKNRNKKKQSGAMSMDITENTFNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNIKAMAKAISKGEQTTEKIL
        MAKN+NKKK+SGA+SMDITENT  ELPQAMDVSESAVHKPASGA NL                  KLKK RPMKRSKNVR   A AKAISK EQ+ EKIL
Subjt:  MAKNRNKKKQSGAMSMDITENTFNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNIKAMAKAISKGEQTTEKIL

Query:  KNQSKIIRIQSAKTLYE
        KNQSK  RI SAKTLYE
Subjt:  KNQSKIIRIQSAKTLYE

A0A6J1IVL9 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X17.4e-3381.25Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVL+AWLAGKP+IQG+M+G SEN S+  GE K  NS+LFPK    KIDFHRQPEIRKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV

A0A6J1IW50 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X27.4e-3381.25Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV
        SSYIVLIHGLFLNG LEDAYKYYLEMKEKELLPEPKIDEVL+AWLAGKP+IQG+M+G SEN S+  GE K  NS+LFPK    KIDFHRQPEIRKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAK--NSRLFPKKIDLKIDFHRQPEIRKV

SwissProt top hitse value%identityAlignment
Q9LFQ4 Pentatricopeptide repeat-containing protein At5g15010, mitochondrial4.8e-1341.49Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV
        SSYIV+IHGLFLNG +E+AY YY EMK+K + P   +++++Q+W +GK   +       +  ++  GE  N     KK + + +F +QPE+RKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV

Arabidopsis top hitse value%identityAlignment
AT4G27380.1 unknown protein1.1e-0431.41Show/hide
Query:  MAKNRNKKKQSGAMSMDITE--NTFNELPQAMDVSESAVHKPASGAPNLCL---------------LSVSPTTSDHYSLFDRKLK---------------
        M K RNKK +    SMD++E  +     PQ MD +E+   K AS A +L                 +       D     D KL                
Subjt:  MAKNRNKKKQSGAMSMDITE--NTFNELPQAMDVSESAVHKPASGAPNLCL---------------LSVSPTTSDHYSLFDRKLK---------------

Query:  -----KRRP--MKRSKNVRNIKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE
              R P  MKR+KN R +KA+AKAI+  E+   K  K+++K +R  SAK LYE
Subjt:  -----KRRP--MKRSKNVRNIKAMAKAISKGEQTTEKILKNQSKIIRIQSAKTLYE

AT5G15010.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.4e-1441.49Show/hide
Query:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV
        SSYIV+IHGLFLNG +E+AY YY EMK+K + P   +++++Q+W +GK   +       +  ++  GE  N     KK + + +F +QPE+RKV
Subjt:  SSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCAAAATATGGCAGCTCTTATATTGTCTTAATACATGGTCTCTTCTTGAATGGAAACTTAGAAGATGCATACAAATACTATCTAGAAATGAAGGAAAAAGAGTT
ACTTCCTGAACCAAAGATAGATGAGGTACTTCAAGCTTGGCTTGCTGGTAAGCCAATGATTCAAGGTCATATGCATGGTTTATCGGAGAACCAATCAAATTGTTTGGGAG
AAGCCAAGAACTCCAGATTGTTCCCCAAAAAAATTGATCTGAAAATTGATTTTCACCGACAACCTGAGATTAGAAAGGTGCATGACATCAACCGTTCATTTGAGTGTGCA
CTAGGCTCAACTCTAGGTTTTGGAGATTCATCAGAAAACACTTCTGATAAATGTGGTGGTGGTCGAACAACAACGTTTTCCGACGGCGTTTCCATTAGGCGCGATTTGCA
GCTTGTGGGTCTGTTTTTGGGCATTTTTCCAGCGTGTTGTCTATTGGTGTTGGACCTCCAAGTTTCTGCAGTTTTGGAGCGTGTTCGCTTTGGGTGCCAATTGCGTTCGG
TTGTCAAATTTCCTATCTTAGGTGGAGTTGTGAGCTTGGACAGCAAACTTTGTTGCTGTTTAGATCGTATGGCTGATTGCCCTGCATGTCTGATTGGTGGTGGTGGCTCA
TCGTATTCTGGAGTTATTGTTGAGCCGTACCCATTATGGGAGTGTTTTGTTTGCTCTTTCAGGTGTCAGGAAATTTTTGGATTTTTCTTACGTATGTTGTTATGCTGCCG
AATTTTCGGTAGCACAATGGCAAGAGTGAGACTAAGCTTAGTAGAACCTTCTCTGATTAGACTAAGCTTAGTAGGATCCTTCGATACGTTACGCTCGATAGTTGTACGCA
CGAGATCGTGCACCCTATCAGTGACTGATAGAGCTTACTTCTTTGGCACGAGATCGTGCATTCCATCAGGACGGTGTCGAGCTAGGCACAGGATTGTGCGCCAGATGTGC
AGAGTTGTTAAGTCTAGAGTTATGAAGTCTGTGTTTGGGGAGCAGACTTGTGAAGGTTTCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCAAAGTGG
GGCTATGTCTATGGACATAACCGAAAATACCTTTAACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTCTGCC
TTCTTTCTGTTTCACCCACAACTTCTGATCATTACTCTTTGTTTGATAGAAAGTTGAAAAAGAGAAGACCAATGAAGCGGTCAAAGAACGTTAGGAATATAAAAGCCATG
GCGAAGGCCATATCCAAGGGTGAGCAGACAACAGAGAAAATATTGAAAAATCAGAGCAAAATTATCAGAATACAATCTGCAAAAACATTGTATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCCAAAATATGGCAGCTCTTATATTGTCTTAATACATGGTCTCTTCTTGAATGGAAACTTAGAAGATGCATACAAATACTATCTAGAAATGAAGGAAAAAGAGTT
ACTTCCTGAACCAAAGATAGATGAGGTACTTCAAGCTTGGCTTGCTGGTAAGCCAATGATTCAAGGTCATATGCATGGTTTATCGGAGAACCAATCAAATTGTTTGGGAG
AAGCCAAGAACTCCAGATTGTTCCCCAAAAAAATTGATCTGAAAATTGATTTTCACCGACAACCTGAGATTAGAAAGGTGCATGACATCAACCGTTCATTTGAGTGTGCA
CTAGGCTCAACTCTAGGTTTTGGAGATTCATCAGAAAACACTTCTGATAAATGTGGTGGTGGTCGAACAACAACGTTTTCCGACGGCGTTTCCATTAGGCGCGATTTGCA
GCTTGTGGGTCTGTTTTTGGGCATTTTTCCAGCGTGTTGTCTATTGGTGTTGGACCTCCAAGTTTCTGCAGTTTTGGAGCGTGTTCGCTTTGGGTGCCAATTGCGTTCGG
TTGTCAAATTTCCTATCTTAGGTGGAGTTGTGAGCTTGGACAGCAAACTTTGTTGCTGTTTAGATCGTATGGCTGATTGCCCTGCATGTCTGATTGGTGGTGGTGGCTCA
TCGTATTCTGGAGTTATTGTTGAGCCGTACCCATTATGGGAGTGTTTTGTTTGCTCTTTCAGGTGTCAGGAAATTTTTGGATTTTTCTTACGTATGTTGTTATGCTGCCG
AATTTTCGGTAGCACAATGGCAAGAGTGAGACTAAGCTTAGTAGAACCTTCTCTGATTAGACTAAGCTTAGTAGGATCCTTCGATACGTTACGCTCGATAGTTGTACGCA
CGAGATCGTGCACCCTATCAGTGACTGATAGAGCTTACTTCTTTGGCACGAGATCGTGCATTCCATCAGGACGGTGTCGAGCTAGGCACAGGATTGTGCGCCAGATGTGC
AGAGTTGTTAAGTCTAGAGTTATGAAGTCTGTGTTTGGGGAGCAGACTTGTGAAGGTTTCTCTCATCTCTCGGCGATGGCGAAGAACAGGAATAAGAAGAAGCAAAGTGG
GGCTATGTCTATGGACATAACCGAAAATACCTTTAACGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCTGGCGCTCCCAATCTCTGCC
TTCTTTCTGTTTCACCCACAACTTCTGATCATTACTCTTTGTTTGATAGAAAGTTGAAAAAGAGAAGACCAATGAAGCGGTCAAAGAACGTTAGGAATATAAAAGCCATG
GCGAAGGCCATATCCAAGGGTGAGCAGACAACAGAGAAAATATTGAAAAATCAGAGCAAAATTATCAGAATACAATCTGCAAAAACATTGTATGAATGA
Protein sequenceShow/hide protein sequence
MFPKYGSSYIVLIHGLFLNGNLEDAYKYYLEMKEKELLPEPKIDEVLQAWLAGKPMIQGHMHGLSENQSNCLGEAKNSRLFPKKIDLKIDFHRQPEIRKVHDINRSFECA
LGSTLGFGDSSENTSDKCGGGRTTTFSDGVSIRRDLQLVGLFLGIFPACCLLVLDLQVSAVLERVRFGCQLRSVVKFPILGGVVSLDSKLCCCLDRMADCPACLIGGGGS
SYSGVIVEPYPLWECFVCSFRCQEIFGFFLRMLLCCRIFGSTMARVRLSLVEPSLIRLSLVGSFDTLRSIVVRTRSCTLSVTDRAYFFGTRSCIPSGRCRARHRIVRQMC
RVVKSRVMKSVFGEQTCEGFSHLSAMAKNRNKKKQSGAMSMDITENTFNELPQAMDVSESAVHKPASGAPNLCLLSVSPTTSDHYSLFDRKLKKRRPMKRSKNVRNIKAM
AKAISKGEQTTEKILKNQSKIIRIQSAKTLYE