; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030245 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030245
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold6:13628903..13638194
RNA-Seq ExpressionSpg030245
SyntenySpg030245
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-1364.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        S F+RLS+STSKK R S S FDRLK+T+DQ QR+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-1364.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        S F+RLS+STSKK R S S FDRLK+T+DQ QR+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.4e-1466.22Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL
        STF+RLS+STSKK R S SVFDRLK+TDDQ QR+M +L+ K F E N D K+HS + SRMKRK SV INTEG++
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL

TYK14888.1 gag protease polyprotein [Cucumis melo var. makuwa]2.1e-1364.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        STF+RLS+STSKK R S S FDRLK+T+DQ QR+M + + K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

TYK19713.1 gag protease polyprotein [Cucumis melo var. makuwa]2.1e-1364.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        STF+RLS+STSKK R S S FDRLK+T+DQ QR+M + + K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein7.7e-1464.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        S F+RLS+STSKK R S S FDRLK+T+DQ QR+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

A0A5A7V7A0 Retrotransposon gag protein2.6e-1466.22Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL
        STF+RLS+STSKK R S SVFDRLK+TDDQ QR+M +L+ K F E N D K+HS + SRMKRK SV INTEG++
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein7.7e-1464.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        S F+RLS+STSKK R S S FDRLK+T+DQ QR+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

A0A5D3CD55 Ty3-gypsy retrotransposon protein1.0e-1364.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        STF+RLS+STSKK R S S FDRLK+T+DQ QR+M + + K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

A0A5D3CUI5 Gag protease polyprotein1.0e-1364.47Show/hide
Query:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV
        STF+RLS+STSKK R S S FDRLK+T+DQ QR+M + + K F E N D K+HS + SRMKRK SV INTEGSL V
Subjt:  STFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGTAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTAATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAAAACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAACTTTCCAAAGGCTAAGTGTT
TCTACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTGAAACTATTCGATGA
AGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTTTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCCCACGTTGCGCTGTT
GTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTGACGCTGCGGTGCTTCCTTCACCAAGTTTGAAGGTTCCCACTTTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCGAAG
GTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGATTCTCATGTTACGCTAGGCTCCGCTGCTGCGCTACTTCCTTCTTTAAGTTTGAAGGTTATCACGCTGCGCT
GCTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCG
AAGGTTCTGAAGCTACGCTGCTTCCTTCACCAAGTTTGAAGGTTCTTACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCATGTTGCTTCGCTGTTGT
TCCTTCTTCAATTTCGAAGGTTCACGCGACGCTGCTTCGTTGTTCCTTCTTCAAGTTCGAAGGTTCTCACGATGCGCTGTTGCGCTGCTTCATTCTCCAAGTTCAAAAGT
TCGCACGTTGTGTTGTTGCGCGCTGCTTCCTTCTCACTCAAAGTTCTCACGTTGCTACGCTGCTTGTCTGCCAGCCTCTCAAGGTTTGAAGGGCACTGCTACGTTGCCAG
TCCCTTCTCTCTCCAAGTTCGAAGGTTCTGATGATGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCGAAGGTC
CTCATGCGCTACGCTACTGTTCCTTCTCCAAGTTCGAAGCGGCAAAAGTCCAAGGAACATGTCCTTGTACTCATGCGGAAAGACGTGACAGCGGCAAAAGTCCATGGAAC
ATGTTCTTGTACTCATGCTGAAAGATGTGGCAACGGAAAAGTCCAAGGAACATCCCCCATCTACCTCCGACTACTGGCTGCCACCGACCTCCACCAACCGGCCGCCGCCG
TCGACCTCCAACTGCTGACCTCCGCCGACCGACCGTCACCGTCGACCTCTGAATACCGGTTGCCGCCGACGACCTCCAACTACCGGTTGCCGCCTACCTCCACTGACCGA
CCGCCGTCGTCGACATCCGACTACCGGCCATCGCTGACCTCCGCCAACCGACCGCCACCGTCGATCTCCGATTACCGGACGTCGTCGATCCACGCTGACCAGCCTCTACC
GACCCACCGCTACCGTCGACCTCCGACTACCTGGCGTCGTCGACCAATCACCACCGTCGACCTCCGATTACCGGACGCCGTCGACCCCCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGTAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTAATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACA
TCAAAACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAACTTTCCAAAGGCTAAGTGTT
TCTACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTGAAACTATTCGATGA
AGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTTTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCCCACGTTGCGCTGTT
GTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTGACGCTGCGGTGCTTCCTTCACCAAGTTTGAAGGTTCCCACTTTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCGAAG
GTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGATTCTCATGTTACGCTAGGCTCCGCTGCTGCGCTACTTCCTTCTTTAAGTTTGAAGGTTATCACGCTGCGCT
GCTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCG
AAGGTTCTGAAGCTACGCTGCTTCCTTCACCAAGTTTGAAGGTTCTTACGCTGCGCTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCATGTTGCTTCGCTGTTGT
TCCTTCTTCAATTTCGAAGGTTCACGCGACGCTGCTTCGTTGTTCCTTCTTCAAGTTCGAAGGTTCTCACGATGCGCTGTTGCGCTGCTTCATTCTCCAAGTTCAAAAGT
TCGCACGTTGTGTTGTTGCGCGCTGCTTCCTTCTCACTCAAAGTTCTCACGTTGCTACGCTGCTTGTCTGCCAGCCTCTCAAGGTTTGAAGGGCACTGCTACGTTGCCAG
TCCCTTCTCTCTCCAAGTTCGAAGGTTCTGATGATGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCGAAGGTC
CTCATGCGCTACGCTACTGTTCCTTCTCCAAGTTCGAAGCGGCAAAAGTCCAAGGAACATGTCCTTGTACTCATGCGGAAAGACGTGACAGCGGCAAAAGTCCATGGAAC
ATGTTCTTGTACTCATGCTGAAAGATGTGGCAACGGAAAAGTCCAAGGAACATCCCCCATCTACCTCCGACTACTGGCTGCCACCGACCTCCACCAACCGGCCGCCGCCG
TCGACCTCCAACTGCTGACCTCCGCCGACCGACCGTCACCGTCGACCTCTGAATACCGGTTGCCGCCGACGACCTCCAACTACCGGTTGCCGCCTACCTCCACTGACCGA
CCGCCGTCGTCGACATCCGACTACCGGCCATCGCTGACCTCCGCCAACCGACCGCCACCGTCGATCTCCGATTACCGGACGTCGTCGATCCACGCTGACCAGCCTCTACC
GACCCACCGCTACCGTCGACCTCCGACTACCTGGCGTCGTCGACCAATCACCACCGTCGACCTCCGATTACCGGACGCCGTCGACCCCCGCTGA
Protein sequenceShow/hide protein sequence
MSSTAHCCFNELTLQEDKASIVVGQETTLQGAYTNDKFLVKYNPLFEPNSDVVTVMMTETRTMEERMAEMQEHIKTLMKAIEEKDSQIAQLKSQIENQHIAESTFQRLSV
STSKKSRSSISVFDRLKVTDDQPQRKMDNLEVKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKVPTLRCCVASFSKFKGSDAAVLPSPSLKVPTLRCFVVPSPSSK
VLTLRCFLLQVRRFSCYARLRCCATSFFKFEGYHAALLRCSFSKFEGSHAALLPSLSSKVPTLRCCAASFSKFEGSEATLLPSPSLKVLTLRCFAVPSPSSKVLMLLRCC
SFFNFEGSRDAASLFLLQVRRFSRCAVALLHSPSSKVRTLCCCALLPSHSKFSRCYAACLPASQGLKGTATLPVPSLSKFEGSDDALLPSPSSKVLTLRCFVVPSPSSKV
LMRYATVPSPSSKRQKSKEHVLVLMRKDVTAAKVHGTCSCTHAERCGNGKVQGTSPIYLRLLAATDLHQPAAAVDLQLLTSADRPSPSTSEYRLPPTTSNYRLPPTSTDR
PPSSTSDYRPSLTSANRPPPSISDYRTSSIHADQPLPTHRYRRPPTTWRRRPITTVDLRLPDAVDPR