; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030246 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030246
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpentatricopeptide repeat-containing protein At5g15010, mitochondrial
Genome locationscaffold6:14978479..14979145
RNA-Seq ExpressionSpg030246
SyntenySpg030246
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008437826.1 PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis melo]3.9e-0839.39Show/hide
Query:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD
        MRSKLC  SLLGRTYF W  +K   HV  RALT   MASGFS WPT           NS  G++      +     + S   ++  + E++CH     D
Subjt:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD

XP_011650654.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Cucumis sativus]1.4e-1044.44Show/hide
Query:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD
        MRSKLC  SLLGRTYF W  VK   HV  RALT A MASGFSLWPT           NS  G    L    +    P     ++  + EQ+CH     D
Subjt:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD

XP_022145432.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Momordica charantia]1.1e-0764.71Show/hide
Query:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT
        MWDG+MRSKL +LS+LGRTYF W  VKST+ V+  ALT   MAS FS  PT
Subjt:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT

XP_022979235.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X1 [Cucurbita maxima]7.9e-0964.71Show/hide
Query:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT
        MW+G+MRSK C LSLL  T+F    VKST+HV  RALT A +ASGFS WPT
Subjt:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT

XP_038895025.1 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like [Benincasa hispida]5.0e-1170.59Show/hide
Query:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT
        MW+G+MRSKLC LSLLGRT+F    VKST+HV+  ALT A MASGFS WPT
Subjt:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT

TrEMBL top hitse value%identityAlignment
A0A0A0L308 Uncharacterized protein7.0e-1144.44Show/hide
Query:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD
        MRSKLC  SLLGRTYF W  VK   HV  RALT A MASGFSLWPT           NS  G    L    +    P     ++  + EQ+CH     D
Subjt:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGL---KNITERPEGAKSVIQQSREQNCHEGVVKD

A0A1S3AUX2 pentatricopeptide repeat-containing protein At5g15010, mitochondrial1.9e-0839.39Show/hide
Query:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD
        MRSKLC  SLLGRTYF W  +K   HV  RALT   MASGFS WPT           NS  G++      +     + S   ++  + E++CH     D
Subjt:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD

A0A5D3DB84 Pentatricopeptide repeat-containing protein1.9e-0839.39Show/hide
Query:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD
        MRSKLC  SLLGRTYF W  +K   HV  RALT   MASGFS WPT           NS  G++      +     + S   ++  + E++CH     D
Subjt:  MRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT----------DNSPKGSYLGLKNITERPEGAKS---VIQQSREQNCHEGVVKD

A0A6J1CVY6 pentatricopeptide repeat-containing protein At5g15010, mitochondrial-like5.5e-0864.71Show/hide
Query:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT
        MWDG+MRSKL +LS+LGRTYF W  VKST+ V+  ALT   MAS FS  PT
Subjt:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT

A0A6J1IVL9 pentatricopeptide repeat-containing protein At5g15010, mitochondrial isoform X13.8e-0964.71Show/hide
Query:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT
        MW+G+MRSK C LSLL  T+F    VKST+HV  RALT A +ASGFS WPT
Subjt:  MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCT
TACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAAAAATATTACGGAGCGACCTGAGGGAGCAAAAT
CCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAG
AATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGATGGAAAAATGAGATCAAAGTTGTGCACATTGTCGCTTTTGGGACGTACGTATTTCATTTGGCCTTTTGTTAAATCCACTAAACATGTTAAGTTCAGAGCTCT
TACCGGTGCTATAATGGCGTCTGGTTTTAGTTTGTGGCCTACTGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTAAAAATATTACGGAGCGACCTGAGGGAGCAAAAT
CCGTGATCCAGCAAAGCAGGGAGCAAAACTGCCACGAGGGAGTCGTCAAAGATAAAGTCATTCACGATTGGGAGACCGAATCAATCGGCTGGAGGCCGAATTGGCGGCAG
AATGGAGATTTAAGAAGACCAAGTGCGATTCCTCTCAAGAAGACGAAGTTCTTCCATGTTCTTGGTGGTTTGGAGCAGTCGTTTCATCTCCCCAATTACTAA
Protein sequenceShow/hide protein sequence
MWDGKMRSKLCTLSLLGRTYFIWPFVKSTKHVKFRALTGAIMASGFSLWPTDNSPKGSYLGLKNITERPEGAKSVIQQSREQNCHEGVVKDKVIHDWETESIGWRPNWRQ
NGDLRRPSAIPLKKTKFFHVLGGLEQSFHLPNY