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Spg030260 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030260
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold6:14340017..14341832
RNA-Seq ExpressionSpg030260
SyntenySpg030260
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.1e-0850.63Show/hide
Query:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        F+ HS +  E + P++MS+M+TD  TSE  MVE           +E+K+NML+K+VEE+DYEIASLK+ +ES+DA ESS
Subjt:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

KAA0050708.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.5e-0748.72Show/hide
Query:  TSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        +S      ET  P++MS+M+T+  TSE+ M            K+E+KINML+K+VEE+DYEIASLK+ +ES+DA ESS
Subjt:  TSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

KAA0051994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.5e-0746.99Show/hide
Query:  LGKFTSHSQQQNETS-SPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        + +  S S++ NE +  P++MS+M+TD  TSE+ M E           +E+K+NML+K VEE+D+EIASLK+ +ES+DAIESS
Subjt:  LGKFTSHSQQQNETS-SPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

KAA0058295.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0645.57Show/hide
Query:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        ++S      E S P++MS+M+T+  TSE  M E           +E+K+NML+K+VEE+DYEIA LK+ +ES+DA ESS
Subjt:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

TYK02185.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.5e-0752.94Show/hide
Query:  SSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        S P++MSIM+TD  TSE  MVE           +E+K+NML+K+VEE+DYEIASL + ++S+DA+ESS
Subjt:  SSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

TrEMBL top hitse value%identityAlignment
A0A5A7U601 Ty3-gypsy retrotransposon protein2.2e-0748.72Show/hide
Query:  TSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        +S      ET  P++MS+M+T+  TSE+ M            K+E+KINML+K+VEE+DYEIASLK+ +ES+DA ESS
Subjt:  TSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

A0A5A7U9H0 Ty3-gypsy retrotransposon protein2.2e-0746.99Show/hide
Query:  LGKFTSHSQQQNETS-SPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        + +  S S++ NE +  P++MS+M+TD  TSE+ M E           +E+K+NML+K VEE+D+EIASLK+ +ES+DAIESS
Subjt:  LGKFTSHSQQQNETS-SPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

A0A5D3BSN4 Ty3-gypsy retrotransposon protein2.2e-0752.94Show/hide
Query:  SSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        S P++MSIM+TD  TSE  MVE           +E+K+NML+K+VEE+DYEIASL + ++S+DA+ESS
Subjt:  SSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

A0A5D3C4W1 Ty3-gypsy retrotransposon protein2.0e-0850.63Show/hide
Query:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        F+ HS +  E + P++MS+M+TD  TSE  MVE           +E+K+NML+K+VEE+DYEIASLK+ +ES+DA ESS
Subjt:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

A0A5D3E0F3 Ty3-gypsy retrotransposon protein8.3e-0748.1Show/hide
Query:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS
        F+ HS +  E + P++MS+M+TD  TSE  M E           +E+K+NML+K+VEE+DYEIA LK+ +ES DA ESS
Subjt:  FTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGGCAAATTCACCTCTCATTCTCAGCAACAAAACGAAACATCAAGTCCTGATGTGATGTCTATTATGATGACTGATGCAGGAACTAGTGAAGAATGGATGGTTGA
AGTTGAGAGGAAGATCAACATGTTACTGAAGAAAGTTGAGAGGAAGATCAACATGTTACTGAAGATAGTTGAAGAAAAAGACTACGAAATCGCCTCTCTCAAAAGCCAGA
TGGAAAGTCAGGATGCCATTGAATCAAGTACTTCGAGCTTAGGCGATGTTGGGAGCCAACCATTCAGAAATCCTTGTCAGACGTTGTCGGCGTGGGTGATGAAGGAGAGG
ATTGCACTCGTGGTTGGCCGAAATCACGTCGACTTGCGACAGAAGAACTGGATCTGTGCATTGCAGTGTCGCTTGGGGAAGAAGGTCGCCGGTGTGGTTGCTAAGGCAAC
ATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGGCAAATTCACCTCTCATTCTCAGCAACAAAACGAAACATCAAGTCCTGATGTGATGTCTATTATGATGACTGATGCAGGAACTAGTGAAGAATGGATGGTTGA
AGTTGAGAGGAAGATCAACATGTTACTGAAGAAAGTTGAGAGGAAGATCAACATGTTACTGAAGATAGTTGAAGAAAAAGACTACGAAATCGCCTCTCTCAAAAGCCAGA
TGGAAAGTCAGGATGCCATTGAATCAAGTACTTCGAGCTTAGGCGATGTTGGGAGCCAACCATTCAGAAATCCTTGTCAGACGTTGTCGGCGTGGGTGATGAAGGAGAGG
ATTGCACTCGTGGTTGGCCGAAATCACGTCGACTTGCGACAGAAGAACTGGATCTGTGCATTGCAGTGTCGCTTGGGGAAGAAGGTCGCCGGTGTGGTTGCTAAGGCAAC
ATTCTGA
Protein sequenceShow/hide protein sequence
MLGKFTSHSQQQNETSSPDVMSIMMTDAGTSEEWMVEVERKINMLLKKVERKINMLLKIVEEKDYEIASLKSQMESQDAIESSTSSLGDVGSQPFRNPCQTLSAWVMKER
IALVVGRNHVDLRQKNWICALQCRLGKKVAGVVAKATF