; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030275 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030275
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold6:14859355..14862710
RNA-Seq ExpressionSpg030275
SyntenySpg030275
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34244.1 hypothetical protein [Cucumis melo subsp. melo]3.1e-2066.3Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++TDDQ QR+M  L+ K F E + D K+ S+VPS MKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-2066.3Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.1e-2066.3Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.9e-2065.22Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++T+DQ QR+M +L+ K F E + D K+ + VPSRMKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.9e-2065.22Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++T+DQ QR+M +L+ K F E + D K+ + VPSRMKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.5e-2066.3Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

A0A5A7UI09 Retrotransposon gag protein3.4e-2065.22Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++T+DQ QR+M +L+ K F E + D K+ + VPSRMKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

A0A5A7V935 Ty3-gypsy retrotransposon protein3.4e-2063.44Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNPT
        ST+TR SAF+RLS+STSKK+R ST  FDR+++T+ Q QR+M +L+ KLF E + D  + S VPSRMKRK S+ INTEGSLTVKP  II TNPT
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNPT

A0A5D3BBF9 Gag protease polyprotein1.5e-2066.3Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

E5GCP7 Uncharacterized protein1.5e-2066.3Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP
        ST+ R SAF+RLS+STSKK R STS FDRL++TDDQ QR+M  L+ K F E + D K+ S+VPS MKRK SV INTEGSLTVKP  II TNP
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGGCTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCGAAGTAACAGA
CGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTCAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCT
CTGTTCTCATAAATACAGAAGGTTCATTGACGGTGAAGCCAAATCTCATTATCGTCACCAATCCTACAATTCCTTCTCTCCAAGTTCGAAAGTTCTCATGCGCTTCGCTG
GAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGGAGTTCCTCCCCTCCAAGTACGAAGTTCCTTCTCTCTAAGTTCGAAGGTTTTCACGCGCTTCGCTG
CAGTTCCTTCTCTCTAAGGTCGAAGGTTCTCACGCTGCTACGTTGCAATTCCTTCTCTCCAAGTTCGAAGGTTCTTACGCTGTTTCGTTGCATTTTCTTCTTTCCAAGTT
TGGAGGTTCTCACGCACTTTGCTACAGTTTCTTCTCTCCAGGTTCGAGCGTTCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAAGTTTGAAGATTCTCCACTGCAC
GCTCCTGCGTTGCTCCTTCTCCAAGTCCGAAGGTTTTGCAGGTGTTGTTATGAAGGCTTGTTGTTCCTTCTCTCAAAGTTTGAAAGTTCTCATGTTGCTACACTACTTAT
TGTTCCTTATCTTCAAGTACACTGCTTGTTGTTCCTTCTCTTCAAGTTTGAAGGACGTGGCGCTGCTTCGCTTGTTGTTCAAATTTTATCCCAGCAGCTTCATACTCGTG
CCTCCCAGTCAGTTTCTCCTTCTTCGGCCCCTGTAGTTTCGACTTCTTCTCCAGCTCCTGCCGTGCGTGATACTTCTCCCTCTCCCTCTCTTTCCGCTACTTCACCATCT
GCAGCTACCTCACCTTCACGTTCTGTTTTGCCTTCGGTTCAAATCCCATCCTCCACGGTTGATTCGGCCGCTGTCCCTTCGGCTCCATCTCTTCCCACCGTTTCTGTTCT
TCCTTTATCTAGTACAGTGATAAGGCAACCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGGCTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCGAAGTAACAGA
CGATCAACCTCAAAGAAAAATGGATAACTTAGAGGTCAAACTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAAGTATTGTCCCGTCACGTATGAAAAGGAAGTTCT
CTGTTCTCATAAATACAGAAGGTTCATTGACGGTGAAGCCAAATCTCATTATCGTCACCAATCCTACAATTCCTTCTCTCCAAGTTCGAAAGTTCTCATGCGCTTCGCTG
GAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGGAGTTCCTCCCCTCCAAGTACGAAGTTCCTTCTCTCTAAGTTCGAAGGTTTTCACGCGCTTCGCTG
CAGTTCCTTCTCTCTAAGGTCGAAGGTTCTCACGCTGCTACGTTGCAATTCCTTCTCTCCAAGTTCGAAGGTTCTTACGCTGTTTCGTTGCATTTTCTTCTTTCCAAGTT
TGGAGGTTCTCACGCACTTTGCTACAGTTTCTTCTCTCCAGGTTCGAGCGTTCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAAGTTTGAAGATTCTCCACTGCAC
GCTCCTGCGTTGCTCCTTCTCCAAGTCCGAAGGTTTTGCAGGTGTTGTTATGAAGGCTTGTTGTTCCTTCTCTCAAAGTTTGAAAGTTCTCATGTTGCTACACTACTTAT
TGTTCCTTATCTTCAAGTACACTGCTTGTTGTTCCTTCTCTTCAAGTTTGAAGGACGTGGCGCTGCTTCGCTTGTTGTTCAAATTTTATCCCAGCAGCTTCATACTCGTG
CCTCCCAGTCAGTTTCTCCTTCTTCGGCCCCTGTAGTTTCGACTTCTTCTCCAGCTCCTGCCGTGCGTGATACTTCTCCCTCTCCCTCTCTTTCCGCTACTTCACCATCT
GCAGCTACCTCACCTTCACGTTCTGTTTTGCCTTCGGTTCAAATCCCATCCTCCACGGTTGATTCGGCCGCTGTCCCTTCGGCTCCATCTCTTCCCACCGTTTCTGTTCT
TCCTTTATCTAGTACAGTGATAAGGCAACCCTAA
Protein sequenceShow/hide protein sequence
MFGSTFTRPSAFQRLSVSTSKKSRSSTSVFDRLEVTDDQPQRKMDNLEVKLFDEVSSDKKLQSIVPSRMKRKFSVLINTEGSLTVKPNLIIVTNPTIPSLQVRKFSCASL
EFLLSKFEGSHAFRWSSSPPSTKFLLSKFEGFHALRCSSFSLRSKVLTLLRCNSFSPSSKVLTLFRCIFFFPSLEVLTHFATVSSLQVRAFLRCTLLRCSFSKFEDSPLH
APALLLLQVRRFCRCCYEGLLFLLSKFESSHVATLLIVPYLQVHCLLFLLFKFEGRGAASLVVQILSQQLHTRASQSVSPSSAPVVSTSSPAPAVRDTSPSPSLSATSPS
AATSPSRSVLPSVQIPSSTVDSAAVPSAPSLPTVSVLPLSSTVIRQP