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Spg030280 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030280
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold6:14739659..14740192
RNA-Seq ExpressionSpg030280
SyntenySpg030280
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]4.7e-1140Show/hide
Query:  KLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEEDLSEVALVVD
        KLNS ASWS+   + G+ WVIHDS GS I + C ++ RKW +K +EG+A +EGLK Y  +        RP I +E     +  ++     DL E++ VVD
Subjt:  KLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEEDLSEVALVVD

Query:  AIVEI
         I ++
Subjt:  AIVEI

XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]2.2e-0830.82Show/hide
Query:  HDPWRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGA
        H  W PPE GW K+N DA+  +  R +GLG VI +  G +I       +   +++  E +A L GL+      + +       + VE DS GV+ +I   
Subjt:  HDPWRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGA

Query:  EEDLSEVALVVDAIVEIARD-EVISFEYCRRSCNVLAHHVACAAAVHGIFFFFWHSFFP
           L+E+  V+  I+E  +  +    ++  RSCNV AH +A   A+  +  F W + FP
Subjt:  EEDLSEVALVVDAIVEIARD-EVISFEYCRRSCNVLAHHVACAAAVHGIFFFFWHSFFP

XP_021848754.1 uncharacterized protein LOC110788421 [Spinacia oleracea]5.2e-1030.41Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLI-GVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEE
        W+PP+ GWWKLN DA  +    R G+G V+ D++G ++ G GC ++E   + K  E +A L GL+          D     + +ESD   +++++KG   
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLI-GVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEE

Query:  DLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAAAVHGIFFFFWHSFFPYFRRWREWEDECIP
        + S   ++V D +  +   +  +F + +RSCN LAH +A A+                F     W DEC P
Subjt:  DLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAAAVHGIFFFFWHSFFPYFRRWREWEDECIP

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.9e-1336.11Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED
        W PP +  W LN+DASWSD+  R G+GW+I    G ++  G   VE   ++K +E  A LEGL+   +L       V  P+ +E+DS  V +++    ED
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED

Query:  LSEVALVVDAIVEIARD--EVISFEYCRRSCNVLAHHVACAAAV
        L++   VV+ I+ + RD  E+++F    R  N  AH +A  A+V
Subjt:  LSEVALVVDAIVEIARD--EVISFEYCRRSCNVLAHHVACAAAV

XP_024041100.1 uncharacterized protein LOC112098855 isoform X1 [Citrus clementina]2.2e-0829.79Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED
        W PP +GW+K+N DA+   A  ++GLG V+ DSSG ++         +  +  ME +A L G++               PI +ESDS+ VV +    +  
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED

Query:  LSEVALVVDAIVEIARDEV-ISFEYCRRSCNVLAHHVACAA
        ++E+   V+ I    +++   S ++  R+ NV+AH +A  A
Subjt:  LSEVALVVDAIVEIARDEV-ISFEYCRRSCNVLAHHVACAA

TrEMBL top hitse value%identityAlignment
A0A5S6RD43 Putative reverse transcriptase3.1e-0832.88Show/hide
Query:  SHDP-WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIK
        +H P W  P+ GW KLN D S+  +  + GLG ++ +S+G +I   C  +ER  +    E +A +EGLK     +         PI VE+D   VV +++
Subjt:  SHDP-WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIK

Query:  GAEEDLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAA
        G   D S +A ++ +A   +  + VIS +   RS N ++HH+A  A
Subjt:  GAEEDLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAA

A0A5S6RD54 Uncharacterized protein3.1e-0832.88Show/hide
Query:  SHDP-WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIK
        +H P W  P+ GW KLN D S+  +  + GLG ++ +S+G +I   C  +ER  +    E +A +EGLK     +         PI VE+D   VV +++
Subjt:  SHDP-WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIK

Query:  GAEEDLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAA
        G   D S +A ++ +A   +  + VIS +   RS N ++HH+A  A
Subjt:  GAEEDLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAA

A0A6J1CQG0 uncharacterized protein LOC1110132162.4e-0834.31Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED
        W  P    WKLN+DASWS+     G+GW++ D  G ++  G  ++  K  I A+E    + GL+     S       R PI +ESDS+ V+ ++K  + D
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED

Query:  LS
        L+
Subjt:  LS

A0A6J1DNV9 uncharacterized protein LOC1110224031.4e-1336.11Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED
        W PP +  W LN+DASWSD+  R G+GW+I    G ++  G   VE   ++K +E  A LEGL+   +L       V  P+ +E+DS  V +++    ED
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED

Query:  LSEVALVVDAIVEIARD--EVISFEYCRRSCNVLAHHVACAAAV
        L++   VV+ I+ + RD  E+++F    R  N  AH +A  A+V
Subjt:  LSEVALVVDAIVEIARD--EVISFEYCRRSCNVLAHHVACAAAV

Q94HY0 Retrotransposon protein, putative, unclassified3.1e-0832.88Show/hide
Query:  SHDP-WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIK
        +H P W  P+ GW KLN D S+  +  + GLG ++ +S+G +I   C  +ER  +    E +A +EGLK     +         PI VE+D   VV +++
Subjt:  SHDP-WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIK

Query:  GAEEDLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAA
        G   D S +A ++ +A   +  + VIS +   RS N ++HH+A  A
Subjt:  GAEEDLSEVALVV-DAIVEIARDEVISFEYCRRSCNVLAHHVACAA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0526.28Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED
        W+ P   W K N+DA+W     R G+GW++ + SG ++ +G   + R  ++     +A LE L+ +  L+    +  R  I  ESD+  +VN++   +  
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEED

Query:  LSEVALVVDAIVEIARDEVISFEYCRRSCNVLAHHVA
         +    + D    +   E + FE+  R  N +A  +A
Subjt:  LSEVALVVDAIVEIARDEVISFEYCRRSCNVLAHHVA

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)9.2e-0531.25Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLK
        W PP  G+ K N D+ +      +   W+I DS+G +I  GC ++++ +S    E   FL  L+
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLK

AT4G29090.1 Ribonuclease H-like superfamily protein3.7e-0628.99Show/hide
Query:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLK-AYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEE
        WRPP   W K N+DA+W+    R G+GWV+ +  G +  +G   + +  S+     +A LE ++ A  SLS  + + V      ESDS  ++ ++   E 
Subjt:  WRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLK-AYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEE

Query:  DLSEVALVVDAIVEIARDEVISFEYCRRSCNVLAHHVA
          S    + D    +++   + F +  R  N LA  VA
Subjt:  DLSEVALVVDAIVEIARDEVISFEYCRRSCNVLAHHVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCATGATCCGTGGAGGCCGCCGGAATTGGGATGGTGGAAGCTCAACTCAGATGCGTCGTGGAGCGATGCGGGCAGGAGAAGCGGGTTGGGATGGGTGATTCATGA
CTCCTCTGGATCTTTGATTGGCGTAGGTTGCATTCAAGTTGAAAGGAAATGGTCGATTAAGGCTATGGAAGGGCAAGCGTTTTTAGAGGGTTTGAAGGCGTATCGTTCCC
TGTCCAGTGGAGAAGGGGATGAGGTCAGACCACCTATTGCTGTTGAGTCGGATTCCATAGGCGTTGTGAACGTGATAAAGGGCGCTGAGGAAGATTTATCTGAGGTCGCT
TTGGTTGTGGACGCCATTGTTGAAATTGCGAGAGATGAAGTCATCTCCTTTGAGTATTGCAGGAGATCTTGTAATGTTTTGGCCCATCATGTTGCTTGTGCTGCAGCTGT
CCATGGAATTTTTTTCTTTTTTTGGCATTCGTTCTTCCCGTATTTCAGAAGATGGCGTGAGTGGGAGGATGAGTGTATTCCCCTAGTTTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCATGATCCGTGGAGGCCGCCGGAATTGGGATGGTGGAAGCTCAACTCAGATGCGTCGTGGAGCGATGCGGGCAGGAGAAGCGGGTTGGGATGGGTGATTCATGA
CTCCTCTGGATCTTTGATTGGCGTAGGTTGCATTCAAGTTGAAAGGAAATGGTCGATTAAGGCTATGGAAGGGCAAGCGTTTTTAGAGGGTTTGAAGGCGTATCGTTCCC
TGTCCAGTGGAGAAGGGGATGAGGTCAGACCACCTATTGCTGTTGAGTCGGATTCCATAGGCGTTGTGAACGTGATAAAGGGCGCTGAGGAAGATTTATCTGAGGTCGCT
TTGGTTGTGGACGCCATTGTTGAAATTGCGAGAGATGAAGTCATCTCCTTTGAGTATTGCAGGAGATCTTGTAATGTTTTGGCCCATCATGTTGCTTGTGCTGCAGCTGT
CCATGGAATTTTTTTCTTTTTTTGGCATTCGTTCTTCCCGTATTTCAGAAGATGGCGTGAGTGGGAGGATGAGTGTATTCCCCTAGTTTGGTGA
Protein sequenceShow/hide protein sequence
MSHDPWRPPELGWWKLNSDASWSDAGRRSGLGWVIHDSSGSLIGVGCIQVERKWSIKAMEGQAFLEGLKAYRSLSSGEGDEVRPPIAVESDSIGVVNVIKGAEEDLSEVA
LVVDAIVEIARDEVISFEYCRRSCNVLAHHVACAAAVHGIFFFFWHSFFPYFRRWREWEDECIPLVW