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Spg030287 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030287
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L11
Genome locationscaffold6:15410617..15415789
RNA-Seq ExpressionSpg030287
SyntenySpg030287
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR002132 - Ribosomal protein L5
IPR011527 - ABC transporter type 1, transmembrane domain
IPR022803 - Ribosomal protein L5 domain superfamily
IPR036640 - ABC transporter type 1, transmembrane domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAD21733.1 60S ribosomal protein L11B [Arabidopsis thaliana]5.3e-1566.2Show/hide
Query:  FSIVNEKLFLAT-LRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        FS+V E+L   T + S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  FSIVNEKLFLAT-LRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

ADR71243.1 60S ribosomal protein L11A [Hevea brasiliensis]5.3e-1570Show/hide
Query:  ATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        A + S  RY V  FGIRCNEKIACY+T+RG+  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  ATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

CAD6255838.1 unnamed protein product [Miscanthus lutarioriparius]2.4e-1551Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVSNFQHASSLPFPSEFLEEPYKSIQAIAKSL
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +    L  KC         L F +E L   YK  + + K +
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVSNFQHASSLPFPSEFLEEPYKSIQAIAKSL

CAD6255848.1 unnamed protein product [Miscanthus lutarioriparius]2.4e-1551Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVSNFQHASSLPFPSEFLEEPYKSIQAIAKSL
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +    L  KC         L F +E L   YK  + + K +
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVSNFQHASSLPFPSEFLEEPYKSIQAIAKSL

PWZ05928.1 60S ribosomal protein L11 [Zea mays]2.4e-1555.42Show/hide
Query:  MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        ++ MDP  + T   S++ +    + + S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

TrEMBL top hitse value%identityAlignment
A0A0D2UN47 Uncharacterized protein3.4e-1550.53Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVS--NFQHASSLPFPSEFLEEPYKSI
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +    L  KC S    QH  +     ++ +  Y+ +
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVS--NFQHASSLPFPSEFLEEPYKSI

A0A2I0IJY7 Uncharacterized protein3.4e-1550.53Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVS--NFQHASSLPFPSEFLEEPYKSI
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +    L  KC S    QH  +     ++ +  Y+ +
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVS--NFQHASSLPFPSEFLEEPYKSI

A0A3L6DC45 60S ribosomal protein L111.2e-1555.42Show/hide
Query:  MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        ++ MDP  + T   S++ +    + + S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

A0A446N949 Uncharacterized protein4.4e-1563.77Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKC
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG   +    L  KC
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKC

I3NMK6 60S ribosomal protein L11A2.6e-1570Show/hide
Query:  ATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        A + S  RY V  FGIRCNEKIACY+T+RG+  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  ATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

SwissProt top hitse value%identityAlignment
A2YDY2 60S ribosomal protein L113.8e-1671.43Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFS+ GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

P42794 60S ribosomal protein L11-21.3e-1673.21Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

P42795 60S ribosomal protein L11-11.3e-1673.21Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

P46287 60S ribosomal protein L112.9e-1671.43Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RG+  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

Q0DK10 60S ribosomal protein L113.8e-1671.43Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFS+ GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

Arabidopsis top hitse value%identityAlignment
AT2G42740.1 ribosomal protein large subunit 16A9.3e-1873.21Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

AT3G58700.1 Ribosomal L5P family protein9.3e-1873.21Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

AT4G18730.1 ribosomal protein L16B9.3e-1873.21Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

AT5G45775.1 Ribosomal L5P family protein9.3e-1873.21Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG

AT5G45775.2 Ribosomal L5P family protein9.3e-1873.21Show/hide
Query:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG
        S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Subjt:  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGGAGATACCCTGTTCTTCCATT
TGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACA
GGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAAATGTGTTTCAAACTTCCAACATGCTTCCTCCCTCCCCTTCCCTTCC
GAATTTCTTGAAGAACCATACAAAAGTATCCAAGCTATTGCAAAAAGCTTAATTGGTTCGCTTATACCTGTGAAGGATATATCATTTTTTGACAGTGAAACTGTTGGTGA
CCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGGAGATACCCTGTTCTTCCATT
TGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACA
GGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAAATGTGTTTCAAACTTCCAACATGCTTCCTCCCTCCCCTTCCCTTCC
GAATTTCTTGAAGAACCATACAAAAGTATCCAAGCTATTGCAAAAAGCTTAATTGGTTCGCTTATACCTGTGAAGGATATATCATTTTTTGACAGTGAAACTGTTGGTGA
CCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCTAG
Protein sequenceShow/hide protein sequence
MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESKCVSNFQHASSLPFPS
EFLEEPYKSIQAIAKSLIGSLIPVKDISFFDSETVGDLTSRLGADCQQVSRVIGNDLNLILRNIL