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Spg030296 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030296
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold10:21453652..21455198
RNA-Seq ExpressionSpg030296
SyntenySpg030296
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]4.9e-2143.45Show/hide
Query:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG
        GKR    D  RER G        R E ++   + +P  KF +YT  T PLE VL  I++  LLK PERM +   +R++ +YC+FH DHGH TQ+C  L+ 
Subjt:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG

Query:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP
        E+E LI  GYLKE+V++ +     T  G+   +P  EIRTI+GGP
Subjt:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.8e-2344.83Show/hide
Query:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG
        GKR    D  RER G        R E ++   + +P  KF +YTP T P+E VL  I+D  LLK PERM++   +R++ +YC+FH DHGH TQ+C  L+ 
Subjt:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG

Query:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP
        E+E LIR GYLKE+V++ +     T  G+   +P  EIRTI+GGP
Subjt:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]8.4e-2143.45Show/hide
Query:  KGKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLR
        +GKR    D  RER G    + +   +   + G+ +   KF +YTP T PLE VL  I+D  LLK PE M++ P++R++ +YC+FH DHGH T +C  L+
Subjt:  KGKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLR

Query:  GEIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGG
         E+E LIR+GYLKE+V D   ++TP ++     +P  EIRTI+GG
Subjt:  GEIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGG

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]6.4e-2143.45Show/hide
Query:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG
        GKR    D  RER G        R E ++   + +P  KF +YTP T PLE VL  I+D  LLK PERM+    +R++ +YC+FH DH H TQ+   L+ 
Subjt:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG

Query:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP
        E+E LIR GYL+E+V++ +     T  G+   +P  EIRTI+GGP
Subjt:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP

XP_030936700.1 uncharacterized protein LOC115961955 [Quercus lobata]2.4e-2043.33Show/hide
Query:  KRRRVE--DSGRERHGHSSAN-GQGRAEIKELQGR-AEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQ
        KR+++E  D+   RH     +  +GR E K+ + R A P  +  +YTPL  PL+ VL  I+D   LK PE+M+ DP++RNR+KYC FH DHGH T EC  
Subjt:  KRRRVE--DSGRERHGHSSAN-GQGRAEIKELQGR-AEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQ

Query:  LRGEIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPL-EIRTILGGPS
        L+ +IE LIR+G L+ F+    K      + +  + PPL EIR I+GG S
Subjt:  LRGEIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPL-EIRTILGGPS

TrEMBL top hitse value%identityAlignment
A0A2N9F6A1 Ribonuclease H4.1e-2142.52Show/hide
Query:  EIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRGEIETLIREGYLKEFVQDRRKRSTPT
        E  E +    P  KF+ +TPL  P++ +L  IQ+   L+ P ++RSDP+ R ++ YC FH DHGH T++C+ L+ ++ETLIR+G L+++VQ  R    P 
Subjt:  EIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRGEIETLIREGYLKEFVQDRRKRSTPT

Query:  DQGKGGNNPP---LEIRTILGGPSGGG
         +G+   N P    EIRTI+GGP+ GG
Subjt:  DQGKGGNNPP---LEIRTILGGPSGGG

A0A6J1CNT2 uncharacterized protein LOC1110128052.4e-2143.45Show/hide
Query:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG
        GKR    D  RER G        R E ++   + +P  KF +YT  T PLE VL  I++  LLK PERM +   +R++ +YC+FH DHGH TQ+C  L+ 
Subjt:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG

Query:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP
        E+E LI  GYLKE+V++ +     T  G+   +P  EIRTI+GGP
Subjt:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP

A0A6J1DWY0 uncharacterized protein LOC1110252938.8e-2444.83Show/hide
Query:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG
        GKR    D  RER G        R E ++   + +P  KF +YTP T P+E VL  I+D  LLK PERM++   +R++ +YC+FH DHGH TQ+C  L+ 
Subjt:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG

Query:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP
        E+E LIR GYLKE+V++ +     T  G+   +P  EIRTI+GGP
Subjt:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP

A0A6J1DYL6 uncharacterized protein LOC1110257853.1e-2143.45Show/hide
Query:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG
        GKR    D  RER G        R E ++   + +P  KF +YTP T PLE VL  I+D  LLK PERM+    +R++ +YC+FH DH H TQ+   L+ 
Subjt:  GKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLRG

Query:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP
        E+E LIR GYL+E+V++ +     T  G+   +P  EIRTI+GGP
Subjt:  EIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGP

A0A6J1DZ52 uncharacterized protein LOC1110256124.1e-2143.45Show/hide
Query:  KGKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLR
        +GKR    D  RER G    + +   +   + G+ +   KF +YTP T PLE VL  I+D  LLK PE M++ P++R++ +YC+FH DHGH T +C  L+
Subjt:  KGKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPDRRNRSKYCMFHGDHGHTTQECIQLR

Query:  GEIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGG
         E+E LIR+GYLKE+V D   ++TP ++     +P  EIRTI+GG
Subjt:  GEIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCACCAAGATCAATCGGAGGTAGACGAGCAGAATCCCCAAGTTCTATTCCAGTCCCAGGAGGTCGAGATCGCAGCAATTAAGGGGAGGATGAACGAGATGGGCCA
AAGCCTGACTGAAATACTTAGTCTATTAAAGAAACTGGGGCCTGTAGGGCTCGGGGAAGAGCATCTACGCAGAGATCCCAAAAAGGGCAAAGGAATAGCAGACAAGGAAG
TAGGGGATTCGGAGAGTGTAACAAGCCGAATGCACCATCCGGGAAATGATCGGACCCGGAGAGAATCGGGACCTAGCCACCAGAAGCTCCGTGGGGATTCGCCGCCAGTC
AATGCCGGGCGTGTATGCAGAGAATGGTGGCAGGAAAAGGGCTCGAGCAGTGTCCAAGGCCGAGCAGGGCTAGAAGCGAAGAGAGCAGGAGCTGTCTCAAGAGGCAAAGG
AAAAAGGCGTCGGGTAGAAGACAGCGGCCGAGAGCGACACGGACACTCCTCGGCCAATGGCCAAGGCCGAGCAGAAATCAAAGAACTTCAAGGCAGGGCCGAGCCGAAAG
CCAAGTTCAACAGGTACACACCGCTAACAGCTCCACTGGAACCGGTGTTAACCGCAATTCAGGACACAAATCTGTTGAAGCGCCCGGAAAGGATGAGGTCAGATCCAGAC
AGGAGAAATAGAAGTAAATACTGCATGTTCCACGGGGACCACGGCCACACAACCCAAGAATGCATACAATTGAGGGGTGAAATAGAAACCCTAATTCGAGAAGGCTATCT
CAAGGAATTCGTACAAGACAGAAGGAAGAGATCAACACCAACAGACCAAGGTAAAGGAGGCAACAACCCCCCACTGGAGATACGAACCATCCTTGGAGGACCCTCGGGGG
GGGGAGTCGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCACCAAGATCAATCGGAGGTAGACGAGCAGAATCCCCAAGTTCTATTCCAGTCCCAGGAGGTCGAGATCGCAGCAATTAAGGGGAGGATGAACGAGATGGGCCA
AAGCCTGACTGAAATACTTAGTCTATTAAAGAAACTGGGGCCTGTAGGGCTCGGGGAAGAGCATCTACGCAGAGATCCCAAAAAGGGCAAAGGAATAGCAGACAAGGAAG
TAGGGGATTCGGAGAGTGTAACAAGCCGAATGCACCATCCGGGAAATGATCGGACCCGGAGAGAATCGGGACCTAGCCACCAGAAGCTCCGTGGGGATTCGCCGCCAGTC
AATGCCGGGCGTGTATGCAGAGAATGGTGGCAGGAAAAGGGCTCGAGCAGTGTCCAAGGCCGAGCAGGGCTAGAAGCGAAGAGAGCAGGAGCTGTCTCAAGAGGCAAAGG
AAAAAGGCGTCGGGTAGAAGACAGCGGCCGAGAGCGACACGGACACTCCTCGGCCAATGGCCAAGGCCGAGCAGAAATCAAAGAACTTCAAGGCAGGGCCGAGCCGAAAG
CCAAGTTCAACAGGTACACACCGCTAACAGCTCCACTGGAACCGGTGTTAACCGCAATTCAGGACACAAATCTGTTGAAGCGCCCGGAAAGGATGAGGTCAGATCCAGAC
AGGAGAAATAGAAGTAAATACTGCATGTTCCACGGGGACCACGGCCACACAACCCAAGAATGCATACAATTGAGGGGTGAAATAGAAACCCTAATTCGAGAAGGCTATCT
CAAGGAATTCGTACAAGACAGAAGGAAGAGATCAACACCAACAGACCAAGGTAAAGGAGGCAACAACCCCCCACTGGAGATACGAACCATCCTTGGAGGACCCTCGGGGG
GGGGAGTCGAGTAG
Protein sequenceShow/hide protein sequence
MEHQDQSEVDEQNPQVLFQSQEVEIAAIKGRMNEMGQSLTEILSLLKKLGPVGLGEEHLRRDPKKGKGIADKEVGDSESVTSRMHHPGNDRTRRESGPSHQKLRGDSPPV
NAGRVCREWWQEKGSSSVQGRAGLEAKRAGAVSRGKGKRRRVEDSGRERHGHSSANGQGRAEIKELQGRAEPKAKFNRYTPLTAPLEPVLTAIQDTNLLKRPERMRSDPD
RRNRSKYCMFHGDHGHTTQECIQLRGEIETLIREGYLKEFVQDRRKRSTPTDQGKGGNNPPLEIRTILGGPSGGGVE