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Spg030300 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030300
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold10:21581278..21583981
RNA-Seq ExpressionSpg030300
SyntenySpg030300
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]6.5e-1548.7Show/hide
Query:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW
        PRGNR  LQT EL                    VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  +F +            EG    +  DDV W
Subjt:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW

Query:  LHAIFRAKLGGGREG
        LHAIFRAK  GG  G
Subjt:  LHAIFRAKLGGGREG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.1e-1752.83Show/hide
Query:  ILPRGNRSSLQTRELVMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRWLHAIFRAKLGGGREG
        ILPRGNR +L T +L  TVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  +F +            EG    +  DD+ WLHA+F AK  G   G
Subjt:  ILPRGNRSSLQTRELVMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRWLHAIFRAKLGGGREG

Query:  IYAWPR
            PR
Subjt:  IYAWPR

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]3.2e-1447.54Show/hide
Query:  LPRGNRSSLQTRELVMT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI------VNVFVQE---------GQRVSLEEDDV
        +PRGNR SLQTREL  T               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+       N  + E         G    +  DDV
Subjt:  LPRGNRSSLQTRELVMT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI------VNVFVQE---------GQRVSLEEDDV

Query:  RWLHAIFRAK-LGGGREGIYAW
         WLHA+FRAK +GG   G+  W
Subjt:  RWLHAIFRAK-LGGGREGIYAW

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.2e-1548.28Show/hide
Query:  LPRGNRSSLQTRELVMT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVR
        +PRGNRSSLQT EL  T                 VEIELPVPDTLPTSAES  ++SSTW+ELY E VH+  +F +            EG    +  DDV 
Subjt:  LPRGNRSSLQTRELVMT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVR

Query:  WLHAIFRAKLGGGREG
        WLH +FRAK+ GG  G
Subjt:  WLHAIFRAKLGGGREG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.5e-1548.7Show/hide
Query:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW
        PRGNR  LQT EL                    VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  +F +            EG    +  DDV W
Subjt:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW

Query:  LHAIFRAKLGGGREG
        LHAIFRAK  GG  G
Subjt:  LHAIFRAKLGGGREG

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.1e-1548.7Show/hide
Query:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW
        PRGNR  LQT EL                    VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  +F +            EG    +  DDV W
Subjt:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW

Query:  LHAIFRAKLGGGREG
        LHAIFRAK  GG  G
Subjt:  LHAIFRAKLGGGREG

A0A5A7UAH6 CCHC-type domain-containing protein5.2e-1852.83Show/hide
Query:  ILPRGNRSSLQTRELVMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRWLHAIFRAKLGGGREG
        ILPRGNR +L T +L  TVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+  +F +            EG    +  DD+ WLHA+F AK  G   G
Subjt:  ILPRGNRSSLQTRELVMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRWLHAIFRAKLGGGREG

Query:  IYAWPR
            PR
Subjt:  IYAWPR

A0A5A7UT17 CCHC-type domain-containing protein1.6e-1447.54Show/hide
Query:  LPRGNRSSLQTRELVMT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI------VNVFVQE---------GQRVSLEEDDV
        +PRGNR SLQTREL  T               V IELPVPD LPTSAESS ++SSTW+ELY ESVH+       N  + E         G    +  DDV
Subjt:  LPRGNRSSLQTRELVMT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI------VNVFVQE---------GQRVSLEEDDV

Query:  RWLHAIFRAK-LGGGREGIYAW
         WLHA+FRAK +GG   G+  W
Subjt:  RWLHAIFRAK-LGGGREGIYAW

A0A5A7VIY9 Uncharacterized protein1.1e-1548.28Show/hide
Query:  LPRGNRSSLQTRELVMT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVR
        +PRGNRSSLQT EL  T                 VEIELPVPDTLPTSAES  ++SSTW+ELY E VH+  +F +            EG    +  DDV 
Subjt:  LPRGNRSSLQTRELVMT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVR

Query:  WLHAIFRAKLGGGREG
        WLH +FRAK+ GG  G
Subjt:  WLHAIFRAKLGGGREG

A0A5D3DR18 Gag/pol protein3.1e-1548.7Show/hide
Query:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW
        PRGNR  LQT EL                    VEIELP+PDTLPTSAESS ++SSTW+ELY ESVH+  +F +            EG    +  DDV W
Subjt:  PRGNRSSLQTREL-----------------VMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQ------------EGQRVSLEEDDVRW

Query:  LHAIFRAKLGGGREG
        LHAIFRAK  GG  G
Subjt:  LHAIFRAKLGGGREG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTAAGTAGGGTTACTTTCAGGAGTTCGATAAAGCGAAGCAGAGAACCTCGGATTCTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGTTATGAC
AGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAA
ATGTTTTCGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGGAGGTGGTCGGGAGGGGATTTATGCT
TGGCCTCGTGTTGATTATACCTCAACTGCTCAATTCGGAAGGTTGCACCGTGAGATTTCCATGTTGCACCTGCTTGTATGCCCTGGAGCTACTAACCATTCGGAGGGTTG
TAACATGGAGATCAGAACAACGCAAACTCCAGAAATGGATAGGATTACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTTAAGTAGGGTTACTTTCAGGAGTTCGATAAAGCGAAGCAGAGAACCTCGGATTCTGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGTTATGAC
AGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAA
ATGTTTTCGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGGAGGTGGTCGGGAGGGGATTTATGCT
TGGCCTCGTGTTGATTATACCTCAACTGCTCAATTCGGAAGGTTGCACCGTGAGATTTCCATGTTGCACCTGCTTGTATGCCCTGGAGCTACTAACCATTCGGAGGGTTG
TAACATGGAGATCAGAACAACGCAAACTCCAGAAATGGATAGGATTACTTAG
Protein sequenceShow/hide protein sequence
MTLSRVTFRSSIKRSREPRILPRGNRSSLQTRELVMTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVFVQEGQRVSLEEDDVRWLHAIFRAKLGGGREGIYA
WPRVDYTSTAQFGRLHREISMLHLLVCPGATNHSEGCNMEIRTTQTPEMDRIT