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Spg030305 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030305
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationscaffold10:21256590..21264847
RNA-Seq ExpressionSpg030305
SyntenySpg030305
Gene Ontology termsNA
InterPro domainsIPR023123 - Tubulin, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3476686.1 Transducin/WD40 repeat-like superfamily protein isoform 1 [Gossypium australe]5.0e-0544.16Show/hide
Query:  SMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVVSTQNFKVPKDKSLDYELHCGLRLSDFVPEVKVETLAVI
        S  G E  CL+VEKGN FYD QFNTRLVKSTIVH +   +          +L+Y LH  + +S F  +  V  L ++
Subjt:  SMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVVSTQNFKVPKDKSLDYELHCGLRLSDFVPEVKVETLAVI

KAG6434821.1 hypothetical protein SASPL_106465 [Salvia splendens]4.5e-0646.38Show/hide
Query:  LSMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVVSTQNFKVPKDKSLDYELHCGLRLSDFVPE
        LS    E  C +VEKG+NFYD Q NTRLVKSTIVH +  +S     +  D  L+ E  CG+  S  V +
Subjt:  LSMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVVSTQNFKVPKDKSLDYELHCGLRLSDFVPE

KAG7020205.1 SPBC2A9.03, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-0576.47Show/hide
Query:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVV
        E  CL+VEKGNNFYD QFNTRLVKSTIVH + V+
Subjt:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVV

XP_013460860.1 uncharacterized WD repeat-containing protein C2A9.03 isoform X1 [Medicago truncatula]1.1e-0437.27Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE-----------GVVSTQNFKVPKDKSL----------------DYELHCGLRLSDFVPEVKVETLAV-----
        CLEVEKGN+FYD QFNTRLVKSTI H +            V   QN+ V    SL                  + HCG  L+  V  V++ T+AV     
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE-----------GVVSTQNFKVPKDKSL----------------DYELHCGLRLSDFVPEVKVETLAV-----

Query:  ----IHGDLI
             HG+L+
Subjt:  ----IHGDLI

XP_022951510.1 uncharacterized WD repeat-containing protein C2A9.03-like isoform X1 [Cucurbita moschata]1.9e-0480.65Show/hide
Query:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE
        E  CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE

TrEMBL top hitse value%identityAlignment
A0A072UYQ2 Putative transcription factor WD40-like family5.4e-0537.27Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE-----------GVVSTQNFKVPKDKSL----------------DYELHCGLRLSDFVPEVKVETLAV-----
        CLEVEKGN+FYD QFNTRLVKSTI H +            V   QN+ V    SL                  + HCG  L+  V  V++ T+AV     
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE-----------GVVSTQNFKVPKDKSL----------------DYELHCGLRLSDFVPEVKVETLAV-----

Query:  ----IHGDLI
             HG+L+
Subjt:  ----IHGDLI

A0A1U8NMZ6 uncharacterized WD repeat-containing protein C2A9.03-like1.2e-0472.22Show/hide
Query:  SMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE
        S  G E  CL+VEKGN FYD QFNTRLVKSTIVH +
Subjt:  SMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE

A0A5B6W5K1 Transducin/WD40 repeat-like superfamily protein isoform 12.4e-0544.16Show/hide
Query:  SMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVVSTQNFKVPKDKSLDYELHCGLRLSDFVPEVKVETLAVI
        S  G E  CL+VEKGN FYD QFNTRLVKSTIVH +   +          +L+Y LH  + +S F  +  V  L ++
Subjt:  SMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVVSTQNFKVPKDKSLDYELHCGLRLSDFVPEVKVETLAVI

A0A6J1GIZ9 uncharacterized WD repeat-containing protein C2A9.03-like isoform X19.1e-0580.65Show/hide
Query:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE
        E  CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE

A0A6J1KNX6 uncharacterized WD repeat-containing protein C2A9.03-like isoform X19.1e-0580.65Show/hide
Query:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE
        E  CL+VEKGNNFYD QFNTRLVKSTIVH +
Subjt:  EWNCLEVEKGNNFYDIQFNTRLVKSTIVHLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G36070.1 Transducin/WD40 repeat-like superfamily protein5.3e-0580Show/hide
Query:  VEKGNNFYDIQFNTRLVKSTIVHLE
        VEKG NFYD QFNTRLV STIVH +
Subjt:  VEKGNNFYDIQFNTRLVKSTIVHLE

AT1G36070.2 Transducin/WD40 repeat-like superfamily protein5.3e-0580Show/hide
Query:  VEKGNNFYDIQFNTRLVKSTIVHLE
        VEKG NFYD QFNTRLV STIVH +
Subjt:  VEKGNNFYDIQFNTRLVKSTIVHLE

AT1G78070.1 Transducin/WD40 repeat-like superfamily protein4.3e-0778.57Show/hide
Query:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE
        CL+VEKG NFYD QFNTRLVKSTI H +
Subjt:  CLEVEKGNNFYDIQFNTRLVKSTIVHLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atggacagcgtcgcgacgctgttgcgtctggaggcaaaaatcggaaattccagcgactgttcttcgattttggacgagattttcaacgatcttcatcatgaaacacctag
tctagacctggacttacagaggataatagatttacaaaatatgcccaaaaatgcaggggcctttacattgacgattcaagaaagcaccctctgctgcactcttctcactg
cagaatattctgtgtccaccgatatcgaccaatactacaagtcagtccttcacggtgttcATCCGTGCGTGGCAGCTAGAACTCCTCAGATCTATCCGTGGGTGGGTAGT
TCGGCACTGTTTGTGGTCGTGAAGGTGTTGTCCATGGGTGGTCGTGAGTGGAATTGCTTGGAAGTTGAAAAGGGGAACAATTTTTATGACATCCAGTTCAATACTAGGCT
TGTTAAATCAACCATTGTTCATTTGGAAGGTGTAGTGTCAACACAGAACTTTAAAGTACCAAAAGACAAGAGCTTGGATTATGAACTTCACTGTGGGCTTAGATTATCAG
ATTTCGTGCCTGAAGTGAAAGTTGAAACTTTGGCTGTAATTCATGGAGACCTGATTCATCAAAGAGGAGGAATGGATGAGATGGAGTTCGCAAAGGCTGAGAGTAATATG
AATGATTTGCTATCAAAGTACCATTAG
mRNA sequenceShow/hide mRNA sequence
atggacagcgtcgcgacgctgttgcgtctggaggcaaaaatcggaaattccagcgactgttcttcgattttggacgagattttcaacgatcttcatcatgaaacacctag
tctagacctggacttacagaggataatagatttacaaaatatgcccaaaaatgcaggggcctttacattgacgattcaagaaagcaccctctgctgcactcttctcactg
cagaatattctgtgtccaccgatatcgaccaatactacaagtcagtccttcacggtgttcATCCGTGCGTGGCAGCTAGAACTCCTCAGATCTATCCGTGGGTGGGTAGT
TCGGCACTGTTTGTGGTCGTGAAGGTGTTGTCCATGGGTGGTCGTGAGTGGAATTGCTTGGAAGTTGAAAAGGGGAACAATTTTTATGACATCCAGTTCAATACTAGGCT
TGTTAAATCAACCATTGTTCATTTGGAAGGTGTAGTGTCAACACAGAACTTTAAAGTACCAAAAGACAAGAGCTTGGATTATGAACTTCACTGTGGGCTTAGATTATCAG
ATTTCGTGCCTGAAGTGAAAGTTGAAACTTTGGCTGTAATTCATGGAGACCTGATTCATCAAAGAGGAGGAATGGATGAGATGGAGTTCGCAAAGGCTGAGAGTAATATG
AATGATTTGCTATCAAAGTACCATTAG
Protein sequenceShow/hide protein sequence
MDSVATLLRLEAKIGNSSDCSSILDEIFNDLHHETPSLDLDLQRIIDLQNMPKNAGAFTLTIQESTLCCTLLTAEYSVSTDIDQYYKSVLHGVHPCVAARTPQIYPWVGS
SALFVVVKVLSMGGREWNCLEVEKGNNFYDIQFNTRLVKSTIVHLEGVVSTQNFKVPKDKSLDYELHCGLRLSDFVPEVKVETLAVIHGDLIHQRGGMDEMEFAKAESNM
NDLLSKYH