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Spg030324 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030324
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:26536245..26545644
RNA-Seq ExpressionSpg030324
SyntenySpg030324
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-2665.81Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG
        L TLSVLRDND VVEIELP+PDTLPTSAESS S+SST     +E   V        +  DDVCWLHA+FRAK  GGPGGGV  M   T+  ++RRQNQ+G
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG

Query:  TQDPTQGQFERGSSTPR
        TQDPTQGQ ERGSSTPR
Subjt:  TQDPTQGQFERGSSTPR

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-2753.61Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW    V             + EDDVCWLHA+FRAK AGGPGGGV 
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT

Query:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS
         M   T+  ++RR NQ+G Q PTQGQ ERGSSTPR        E E E F     E  R    + S
Subjt:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.0e-2465.42Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEGTQDPTQGQFER
        PL TLSVLRDNDAV EIELPVPDTL TSAESS S+S +       +  DDVCWLHAIFRAK+ GGPGGGVT  SHATTYQQ  +           GQ ER
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEGTQDPTQGQFER

Query:  GSSTPRE
        GSSTPR+
Subjt:  GSSTPRE

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-2665.81Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG
        L TLSVLRDND VVEIELP+PDTLPTSAESS S+SST     +E   V        +  DDVCWLHA+FRAK  GGPGGGV  M   T+  ++RRQNQ+G
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG

Query:  TQDPTQGQFERGSSTPR
        TQDPTQGQ ERGSSTPR
Subjt:  TQDPTQGQFERGSSTPR

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-2753.61Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW    V             + EDDVCWLHA+FRAK AGGPGGGV 
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT

Query:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS
         M   T+  ++RR NQ+G Q PTQGQ ERGSSTPR        E E E F     E  R    + S
Subjt:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase5.4e-2765.81Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG
        L TLSVLRDND VVEIELP+PDTLPTSAESS S+SST     +E   V        +  DDVCWLHA+FRAK  GGPGGGV  M   T+  ++RRQNQ+G
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG

Query:  TQDPTQGQFERGSSTPR
        TQDPTQGQ ERGSSTPR
Subjt:  TQDPTQGQFERGSSTPR

A0A5A7VMG9 Reverse transcriptase2.4e-2753.61Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW    V             + EDDVCWLHA+FRAK AGGPGGGV 
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT

Query:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS
         M   T+  ++RR NQ+G Q PTQGQ ERGSSTPR        E E E F     E  R    + S
Subjt:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS

A0A5D3BNX1 Zf-CCHC domain-containing protein5.1e-2565.42Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEGTQDPTQGQFER
        PL TLSVLRDNDAV EIELPVPDTL TSAESS S+S +       +  DDVCWLHAIFRAK+ GGPGGGVT  SHATTYQQ  +           GQ ER
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVSLEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEGTQDPTQGQFER

Query:  GSSTPRE
        GSSTPR+
Subjt:  GSSTPRE

A0A5D3D150 Reverse transcriptase5.4e-2765.81Show/hide
Query:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG
        L TLSVLRDND VVEIELP+PDTLPTSAESS S+SST     +E   V        +  DDVCWLHA+FRAK  GGPGGGV  M   T+  ++RRQNQ+G
Subjt:  LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSST-----WEGQRVS-------LEEDDVCWLHAIFRAKLAGGPGGGVTIMSHATTYQQQRRQNQEG

Query:  TQDPTQGQFERGSSTPR
        TQDPTQGQ ERGSSTPR
Subjt:  TQDPTQGQFERGSSTPR

A0A5D3DX39 Reverse transcriptase2.4e-2753.61Show/hide
Query:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT
        ++ S  L+G +      PL TLSVLRDNDAVVEIELPVPDTLPTSAESS S+SSTW    V             + EDDVCWLHA+FRAK AGGPGGGV 
Subjt:  QVESEALFGYI------PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVS------------LEEDDVCWLHAIFRAKLAGGPGGGVT

Query:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS
         M   T+  ++RR NQ+G Q PTQGQ ERGSSTPR        E E E F     E  R    + S
Subjt:  IMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGTGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCT
CCAGATCAAGCTCCAGTACGTGGGAGGGTCAGCGGGTATCCTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
GGTGTGACAATAATGAGTCATGCCACCACGTACCAGCAGCAACGCAGGCAGAATCAGGAAGGGACGCAGGATCCTACCCAAGGTCAATTTGAAAGGGGATCCAGTACCCC
GAGAGAGAACTTGATGGAGAGAGTTAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCT
GGGTTCAACCTGTCAACCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGTGGTGTACAAGTTGAATCAGAAGC
TCTATTTGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCT
CCAGATCAAGCTCCAGTACGTGGGAGGGTCAGCGGGTATCCTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
GGTGTGACAATAATGAGTCATGCCACCACGTACCAGCAGCAACGCAGGCAGAATCAGGAAGGGACGCAGGATCCTACCCAAGGTCAATTTGAAAGGGGATCCAGTACCCC
GAGAGAGAACTTGATGGAGAGAGTTAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCTACAGCAGAATCT
GGGTTCAACCTGTCAACCTCTGA
Protein sequenceShow/hide protein sequence
MIFGMENRAQDFRAKQEDLWFSLVFRAFCGVQVESEALFGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWEGQRVSLEEDDVCWLHAIFRAKLAGGPGG
GVTIMSHATTYQQQRRQNQEGTQDPTQGQFERGSSTPRENLMERVKEEEEEEFRGFEVEEDRKSSCKASYSRIWVQPVNL