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Spg030330 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030330
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:24861955..24864485
RNA-Seq ExpressionSpg030330
SyntenySpg030330
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-1961.11Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        VEIELPVPD LPTS ESSRS+SS W+ELY ESV++   + V+ QT+ CQGC   S +       +  DDV WLHAIFR K AGGPGGGVT
Subjt:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]9.1e-1954.81Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGP
        PRGNR +L T KL KTVEIELPVPDTLPTS ESS+S+SS W+ELY ESV++  +F    +++      C    EG    +  DD+ WLHA+F  K AG P
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.7e-1850Show/hide
Query:  GRPRGNRSSLQTRKLAKT---------------VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEED
        G PRGNR SLQTR+L KT               V IELPVPD LPTS ESS S+SS W+ELY ESV+ V +F  F  ++            G    +  D
Subjt:  GRPRGNRSSLQTRKLAKT---------------VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEED

Query:  DVRWLHAIFRTKLAGGPGGGVT
        DV WLHA+FR K  GGPGGGVT
Subjt:  DVRWLHAIFRTKLAGGPGGGVT
TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]9.1e-1961.11Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        VEIELPVPD LPTS ESSRS+SS W+ELY ESV++   + V+ QT+ CQGC   S +       +  DDV WLHAIFR K AGGPGGGVT
Subjt:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.0e-1750Show/hide
Query:  PRGNRSSLQTRKLAKTV---------------EIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDV
        PRGNR SLQT +L KTV                IELPVPDTLPTS ESS S+SS W+ELY ESV+ V +F  F  ++            G    +  DDV
Subjt:  PRGNRSSLQTRKLAKTV---------------EIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDV

Query:  RWLHAIFRTKLAGGPGGGVT
         WLHA+FR K  GGPGGGVT
Subjt:  RWLHAIFRTKLAGGPGGGVT
TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.4e-1961.11Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        VEIELPVPD LPTS ESSRS+SS W+ELY ESV++   + V+ QT+ CQGC   S +       +  DDV WLHAIFR K AGGPGGGVT
Subjt:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
A0A5A7UAH6 CCHC-type domain-containing protein4.4e-1954.81Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGP
        PRGNR +L T KL KTVEIELPVPDTLPTS ESS+S+SS W+ELY ESV++  +F    +++      C    EG    +  DD+ WLHA+F  K AG P
Subjt:  PRGNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGP

Query:  GGGV
        GGGV
Subjt:  GGGV
A0A5A7UT17 CCHC-type domain-containing protein1.3e-1850Show/hide
Query:  GRPRGNRSSLQTRKLAKT---------------VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEED
        G PRGNR SLQTR+L KT               V IELPVPD LPTS ESS S+SS W+ELY ESV+ V +F  F  ++            G    +  D
Subjt:  GRPRGNRSSLQTRKLAKT---------------VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEED

Query:  DVRWLHAIFRTKLAGGPGGGVT
        DV WLHA+FR K  GGPGGGVT
Subjt:  DVRWLHAIFRTKLAGGPGGGVT
A0A5D3BTP3 Reverse transcriptase4.4e-1961.11Show/hide
Query:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
        VEIELPVPD LPTS ESSRS+SS W+ELY ESV++   + V+ QT+ CQGC   S +       +  DDV WLHAIFR K AGGPGGGVT
Subjt:  VEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVF-VVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVT
A0A5D3CJX3 CCHC-type domain-containing protein4.9e-1850Show/hide
Query:  PRGNRSSLQTRKLAKTV---------------EIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDV
        PRGNR SLQT +L KTV                IELPVPDTLPTS ESS S+SS W+ELY ESV+ V +F  F  ++            G    +  DDV
Subjt:  PRGNRSSLQTRKLAKTV---------------EIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDV

Query:  RWLHAIFRTKLAGGPGGGVT
         WLHA+FR K  GGPGGGVT
Subjt:  RWLHAIFRTKLAGGPGGGVT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTC
CAGATCAAGCTCCAGTATGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTTGTTGTTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCATGTTCAA
TGTTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCAATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTCGCA
AATCTCTTTTCTTTATGCGCTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTACTGAAAGTTC
CAGATCAAGCTCCAGTATGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTTTTTGTTGTTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCATGTTCAA
TGTTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCAATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGTCGCA
AATCTCTTTTCTTTATGCGCTGGATAG
Protein sequenceShow/hide protein sequence
MGRPRGNRSSLQTRKLAKTVEIELPVPDTLPTSTESSRSSSSMWVELYIESVYIVNVFVVFQTELCQGCTSCSMFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGVTVA
NLFSLCAG