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Spg030332 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030332
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:24479313..24487747
RNA-Seq ExpressionSpg030332
SyntenySpg030332
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]4.3e-1249.06Show/hide
Query:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA
        ++WV   R    EN   ++PRGNR SLQTGELDKT                 VEIELPV DTLP SAESS S+  S         + EDDV WLH +FR 
Subjt:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA

Query:  KLAGGP
        K AGGP
Subjt:  KLAGGP

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.3e-1145.71Show/hide
Query:  VFENEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEEDDVRWLHAIFRAK
        VF +    +PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+ S+  +                          EG    +  DD+ WLHA+F AK
Subjt:  VFENEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEEDDVRWLHAIFRAK

Query:  LAGGP
         AG P
Subjt:  LAGGP

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.6e-1144.07Show/hide
Query:  EEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEE
        E  ++PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+ S+  +                          EG    +  
Subjt:  EEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEE

Query:  DDVRWLHAIFRAKLAGGP
        DDV WLH +FRAK+AGGP
Subjt:  DDVRWLHAIFRAKLAGGP

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]5.6e-1250Show/hide
Query:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA
        ++WV   R    EN   ++PRGNRSSLQTG+LDKT                 VEIELPVPDT PTSAESS S+ SS         +  DDV WLHA+FRA
Subjt:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA

Query:  KL
        K+
Subjt:  KL

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]5.4e-1532.84Show/hide
Query:  LFSTHFPIISHLFPPKLSEHFKERVKEEEEEEFRGFEVEEDRKSSCKANHSRIW----------------------VQNCRYGVF------ENEEFDV-P
        LF  +F    H FP KLSEHF+ERVK EEEEEFRG  +++  KSSCKANH RIW                      VQ     ++      ++ ++DV P
Subjt:  LFSTHFPIISHLFPPKLSEHFKERVKEEEEEEFRGFEVEEDRKSSCKANHSRIW----------------------VQNCRYGVF------ENEEFDV-P

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESSRSSFS-------------STFQEGRRVSLE--------EDDVRWLHAIFRAKLAGG
        VPDTLPTSAESS S+ S             S  +   R+  E        E+DV WLHA+FRAK+AGG
Subjt:  VPDTLPTSAESSRSSFS-------------STFQEGRRVSLE--------EDDVRWLHAIFRAKLAGG

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein6.1e-1245.71Show/hide
Query:  VFENEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEEDDVRWLHAIFRAK
        VF +    +PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+ S+  +                          EG    +  DD+ WLHA+F AK
Subjt:  VFENEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEEDDVRWLHAIFRAK

Query:  LAGGP
         AG P
Subjt:  LAGGP

A0A5A7VIY9 Uncharacterized protein7.9e-1244.07Show/hide
Query:  EEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEE
        E  ++PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  S+ S+  +                          EG    +  
Subjt:  EEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQ--------------------------EGRRVSLEE

Query:  DDVRWLHAIFRAKLAGGP
        DDV WLH +FRAK+AGGP
Subjt:  DDVRWLHAIFRAKLAGGP

A0A5D3BQ75 Uncharacterized protein2.7e-1250Show/hide
Query:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA
        ++WV   R    EN   ++PRGNRSSLQTG+LDKT                 VEIELPVPDT PTSAESS S+ SS         +  DDV WLHA+FRA
Subjt:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA

Query:  KL
        K+
Subjt:  KL

A0A5D3BSA6 Retrotrans_gag domain-containing protein2.1e-1249.06Show/hide
Query:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA
        ++WV   R    EN   ++PRGNR SLQTGELDKT                 VEIELPV DTLP SAESS S+  S         + EDDV WLH +FR 
Subjt:  RIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRA

Query:  KLAGGP
        K AGGP
Subjt:  KLAGGP

A0A5D3CAC6 Uncharacterized protein2.6e-1532.84Show/hide
Query:  LFSTHFPIISHLFPPKLSEHFKERVKEEEEEEFRGFEVEEDRKSSCKANHSRIW----------------------VQNCRYGVF------ENEEFDV-P
        LF  +F    H FP KLSEHF+ERVK EEEEEFRG  +++  KSSCKANH RIW                      VQ     ++      ++ ++DV P
Subjt:  LFSTHFPIISHLFPPKLSEHFKERVKEEEEEEFRGFEVEEDRKSSCKANHSRIW----------------------VQNCRYGVF------ENEEFDV-P

Query:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP
        RGNRSSLQTG+LDK                                                                               ++EIEL 
Subjt:  RGNRSSLQTGELDK-------------------------------------------------------------------------------TVEIELP

Query:  VPDTLPTSAESSRSSFS-------------STFQEGRRVSLE--------EDDVRWLHAIFRAKLAGG
        VPDTLPTSAESS S+ S             S  +   R+  E        E+DV WLHA+FRAK+AGG
Subjt:  VPDTLPTSAESSRSSFS-------------STFQEGRRVSLE--------EDDVRWLHAIFRAKLAGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTAAGGAGACTCCCACCACTGCCTAACTTATTCTCAACCCATTTTCCCATCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAA
GGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGGGTGCAAAACTGTAGGTATGGAGTGT
TCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGCTCCAGATCAAGCTTCAGTTCTACGTTTCAGGAGGGTCGACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCT
AGCAGGTGGTCCGCGAAGAAACTACAAGGAGGCTACTGTGTTTTCGTTCGTTGAAGCGTCGTTCGCGAAGAACGGTCAAGTCTACAATGAAGGTTTTTATGAGATGAAAA
TCGGTGAAATCGCCGCTGAAATCCGAGGCCAAAACCGAGAACGAGCTGCTGTTTCTGCCCAGAATACGCTTCCAGACGCAACAGCGTCGGGACGCTACTCCAACAGCGTC
TCGACGCTGTCTCGATACGCAGGCGCTCAGGTAAGGAAAGTGCACAGCGTCGGGATGCTGCGATGCAAGCGTCTCGACGCTGTCACGATGACGGCGCAAATTAGGGCTTC
AACAGGCGCGGTTCAAGCTCGTGGGCGGTCCGGTTCACTCCGGTTCGGTTGGGCTGGGACCTATTTGGTCCGGTTCAGCTACTTTTTGGCATGGTTCGTGATTTTAGAAG
TCGGTTCGAGGTTGTTCGGGGCGGTTCGTGCTGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTAAGGAGACTCCCACCACTGCCTAACTTATTCTCAACCCATTTTCCCATCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAA
GGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGGGTGCAAAACTGTAGGTATGGAGTGT
TCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGCTCCAGATCAAGCTTCAGTTCTACGTTTCAGGAGGGTCGACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCT
AGCAGGTGGTCCGCGAAGAAACTACAAGGAGGCTACTGTGTTTTCGTTCGTTGAAGCGTCGTTCGCGAAGAACGGTCAAGTCTACAATGAAGGTTTTTATGAGATGAAAA
TCGGTGAAATCGCCGCTGAAATCCGAGGCCAAAACCGAGAACGAGCTGCTGTTTCTGCCCAGAATACGCTTCCAGACGCAACAGCGTCGGGACGCTACTCCAACAGCGTC
TCGACGCTGTCTCGATACGCAGGCGCTCAGGTAAGGAAAGTGCACAGCGTCGGGATGCTGCGATGCAAGCGTCTCGACGCTGTCACGATGACGGCGCAAATTAGGGCTTC
AACAGGCGCGGTTCAAGCTCGTGGGCGGTCCGGTTCACTCCGGTTCGGTTGGGCTGGGACCTATTTGGTCCGGTTCAGCTACTTTTTGGCATGGTTCGTGATTTTAGAAG
TCGGTTCGAGGTTGTTCGGGGCGGTTCGTGCTGTATAG
Protein sequenceShow/hide protein sequence
MVLRRLPPLPNLFSTHFPIISHLFPPKLSEHFKERVKEEEEEEFRGFEVEEDRKSSCKANHSRIWVQNCRYGVFENEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPT
SAESSRSSFSSTFQEGRRVSLEEDDVRWLHAIFRAKLAGGPRRNYKEATVFSFVEASFAKNGQVYNEGFYEMKIGEIAAEIRGQNRERAAVSAQNTLPDATASGRYSNSV
STLSRYAGAQVRKVHSVGMLRCKRLDAVTMTAQIRASTGAVQARGRSGSLRFGWAGTYLVRFSYFLAWFVILEVGSRLFGAVRAV