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Spg030337 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030337
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposable element Tf2
Genome locationscaffold6:24952134..24954138
RNA-Seq ExpressionSpg030337
SyntenySpg030337
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]2.9e-0850.68Show/hide
Query:  SPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF
        +PS  S+ Q    +  T T  Y F HA +K +K+WF +NGYLQD+ + KN +FLN KSKL+A LAQ TT A F
Subjt:  SPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]3.4e-0963.46Show/hide
Query:  YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF
        Y F HA +K +K+WFA+N YLQD+ +RKN EFLN KSKL+ ALAQ TT A F
Subjt:  YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]4.8e-1142.52Show/hide
Query:  LTPPSRPSASLVRPTAV-TPMRPTISPSIPSSPQQGSSIPTTFTVV-----------------------------YKFSHAELKAVKQWFADNGYLQDLS
        +TPP RPSA+L+R + +   MRP  S    SS ++ S+  TT++                               Y F HA +K +K+WFADNGYLQD+ 
Subjt:  LTPPSRPSASLVRPTAV-TPMRPTISPSIPSSPQQGSSIPTTFTVV-----------------------------YKFSHAELKAVKQWFADNGYLQDLS

Query:  KRKNAEFLNSKSKLIAALAQTTTVARF
        +RKN EFLN KSKL+AALAQ TT A F
Subjt:  KRKNAEFLNSKSKLIAALAQTTTVARF

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]1.3e-0846.67Show/hide
Query:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRP-TAVTPMRPTISPSIPSSPQQGSSIPTTF--TVVYKFSHAELKAVKQWFADNG
        MSAD+YAMDLGFT V R R+R +SI+I  S ES TPP RPSA+L+RP      MRP   P+ PSS ++ S+ PTT+  TV           +K +F  + 
Subjt:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRP-TAVTPMRPTISPSIPSSPQQGSSIPTTF--TVVYKFSHAELKAVKQWFADNG

Query:  YLQDL
         + DL
Subjt:  YLQDL

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]1.5e-1240.54Show/hide
Query:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTA-VTPMRPTISPSIPSSPQQGSSIPTTFTVVYK-----FSHAELKA------
        MS D+YAMDLG+T V + R++ + I IR  MES TPP RPS +L+ P   V  MR + S   PSS ++ S++PTT++             E+K+      
Subjt:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTA-VTPMRPTISPSIPSSPQQGSSIPTTFTVVYK-----FSHAELKA------

Query:  ------VKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF
              ++  +  NG LQD+ +RKNA+FLN K K +AAL Q T  A F
Subjt:  ------VKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF

TrEMBL top hitse value%identityAlignment
A0A5A7SNT5 Uncharacterized protein1.4e-0850.68Show/hide
Query:  SPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF
        +PS  S+ Q    +  T T  Y F HA +K +K+WF +NGYLQD+ + KN +FLN KSKL+A LAQ TT A F
Subjt:  SPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF

A0A5A7SWC0 Uncharacterized protein1.7e-0963.46Show/hide
Query:  YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF
        Y F HA +K +K+WFA+N YLQD+ +RKN EFLN KSKL+ ALAQ TT A F
Subjt:  YKFSHAELKAVKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF

A0A5A7UZX0 Polyprotein2.3e-1142.52Show/hide
Query:  LTPPSRPSASLVRPTAV-TPMRPTISPSIPSSPQQGSSIPTTFTVV-----------------------------YKFSHAELKAVKQWFADNGYLQDLS
        +TPP RPSA+L+R + +   MRP  S    SS ++ S+  TT++                               Y F HA +K +K+WFADNGYLQD+ 
Subjt:  LTPPSRPSASLVRPTAV-TPMRPTISPSIPSSPQQGSSIPTTFTVV-----------------------------YKFSHAELKAVKQWFADNGYLQDLS

Query:  KRKNAEFLNSKSKLIAALAQTTTVARF
        +RKN EFLN KSKL+AALAQ TT A F
Subjt:  KRKNAEFLNSKSKLIAALAQTTTVARF

A0A5D3BI61 Uncharacterized protein7.2e-1340.54Show/hide
Query:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTA-VTPMRPTISPSIPSSPQQGSSIPTTFTVVYK-----FSHAELKA------
        MS D+YAMDLG+T V + R++ + I IR  MES TPP RPS +L+ P   V  MR + S   PSS ++ S++PTT++             E+K+      
Subjt:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTA-VTPMRPTISPSIPSSPQQGSSIPTTFTVVYK-----FSHAELKA------

Query:  ------VKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF
              ++  +  NG LQD+ +RKNA+FLN K K +AAL Q T  A F
Subjt:  ------VKQWFADNGYLQDLSKRKNAEFLNSKSKLIAALAQTTTVARF

A0A5D3BM67 Uncharacterized protein6.3e-0946.67Show/hide
Query:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRP-TAVTPMRPTISPSIPSSPQQGSSIPTTF--TVVYKFSHAELKAVKQWFADNG
        MSAD+YAMDLGFT V R R+R +SI+I  S ES TPP RPSA+L+RP      MRP   P+ PSS ++ S+ PTT+  TV           +K +F  + 
Subjt:  MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRP-TAVTPMRPTISPSIPSSPQQGSSIPTTF--TVVYKFSHAELKAVKQWFADNG

Query:  YLQDL
         + DL
Subjt:  YLQDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCGGACGAATATGCAATGGACTTAGGTTTCACTCTAGTGAATCGCCCGAGGACCAGAATTGCTTCAATTCAAATCAGAGATTCAATGGAGTCTTTAACTCCACC
ATCGAGGCCATCCGCCTCTCTCGTACGGCCTACTGCCGTTACTCCAATGAGACCTACTATCTCTCCATCTATTCCATCTTCGCCTCAACAGGGATCTTCTATCCCTACAA
CTTTTACTGTAGTCTATAAGTTCTCACACGCAGAACTCAAAGCAGTCAAACAATGGTTCGCCGACAATGGTTACCTTCAAGACCTCTCCAAAAGGAAAAATGCTGAATTT
TTGAATTCAAAATCAAAGTTGATAGCTGCTTTGGCACAAACCACGACTGTTGCACGTTTTTTAATCTGCAAGCGAACGGGTCGTCACAAGAGCAAAGTTGGTGATTTTGG
GAGAAAAAGTGCAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCATGGATCAAAAGGGGATCCAATGAAGCCAATCATGATGAAAATGCCCAAAAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCGGACGAATATGCAATGGACTTAGGTTTCACTCTAGTGAATCGCCCGAGGACCAGAATTGCTTCAATTCAAATCAGAGATTCAATGGAGTCTTTAACTCCACC
ATCGAGGCCATCCGCCTCTCTCGTACGGCCTACTGCCGTTACTCCAATGAGACCTACTATCTCTCCATCTATTCCATCTTCGCCTCAACAGGGATCTTCTATCCCTACAA
CTTTTACTGTAGTCTATAAGTTCTCACACGCAGAACTCAAAGCAGTCAAACAATGGTTCGCCGACAATGGTTACCTTCAAGACCTCTCCAAAAGGAAAAATGCTGAATTT
TTGAATTCAAAATCAAAGTTGATAGCTGCTTTGGCACAAACCACGACTGTTGCACGTTTTTTAATCTGCAAGCGAACGGGTCGTCACAAGAGCAAAGTTGGTGATTTTGG
GAGAAAAAGTGCAAAAAATGAAGCAAATGAAGCCCAAATCCAAGCATGGATCAAAAGGGGATCCAATGAAGCCAATCATGATGAAAATGCCCAAAAGAAGTGA
Protein sequenceShow/hide protein sequence
MSADEYAMDLGFTLVNRPRTRIASIQIRDSMESLTPPSRPSASLVRPTAVTPMRPTISPSIPSSPQQGSSIPTTFTVVYKFSHAELKAVKQWFADNGYLQDLSKRKNAEF
LNSKSKLIAALAQTTTVARFLICKRTGRHKSKVGDFGRKSAKNEANEAQIQAWIKRGSNEANHDENAQKK