; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030345 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030345
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:26283403..26287758
RNA-Seq ExpressionSpg030345
SyntenySpg030345
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-2656.64Show/hide
Query:  GSEINLSTSGVLVGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTW-------------------
        G+ +NL    VL GL Y EGTKRPRGNR+SLQTGEL KT                 VEIELPVPDTLPTSAESS S+SSTW                   
Subjt:  GSEINLSTSGVLVGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTW-------------------

Query:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
                FNVSVGST IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.0e-2250Show/hide
Query:  KAHAKPAIAGSEINLSTSGVLVGLSYTEGTK----------------------RPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSSTWFNV--
        K +AKPAIA S  N     VL GLSY E  +                       PRGNR +L TG+L KTVEIELPVPDTLPTSAESS+S+SSTW  +  
Subjt:  KAHAKPAIAGSEINLSTSGVLVGLSYTEGTK----------------------RPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSSTWFNV--

Query:  -SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
         SV                     GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  -SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.3e-2257.26Show/hide
Query:  PRGNRSSLQTGELAKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC
        PRGNR SLQT EL KT               V IELPVPD LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELAKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGGVTTWYQS
        WLHAVFRAK  GGPGGGVTTW  S
Subjt:  WLHAVFRAKLAGGPGGGVTTWYQS

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.5e-2152.24Show/hide
Query:  VGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV------------------------GS
        V +S  E  + PRGNRSSLQTGEL KT                 VEIELPVPDTLPTSAES  S+SSTW  +                          GS
Subjt:  VGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV------------------------GS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
         GIVRGDDVCWLH VFRAK+AGGPGGGVT   QS
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]2.5e-2458.87Show/hide
Query:  PRGNRSSLQTGELAKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC
        PRGNR SLQTGEL KTV                IELPVPDTLPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELAKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGGVTTWYQS
        WLHAVFRAK  GGPGGGVTTW  S
Subjt:  WLHAVFRAKLAGGPGGGVTTWYQS

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.7e-2656.64Show/hide
Query:  GSEINLSTSGVLVGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTW-------------------
        G+ +NL    VL GL Y EGTKRPRGNR+SLQTGEL KT                 VEIELPVPDTLPTSAESS S+SSTW                   
Subjt:  GSEINLSTSGVLVGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTW-------------------

Query:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
                FNVSVGST IVRGD+VCWLHAVF AK AGGPGGGV
Subjt:  --------FNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7UAH6 CCHC-type domain-containing protein5.0e-2350Show/hide
Query:  KAHAKPAIAGSEINLSTSGVLVGLSYTEGTK----------------------RPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSSTWFNV--
        K +AKPAIA S  N     VL GLSY E  +                       PRGNR +L TG+L KTVEIELPVPDTLPTSAESS+S+SSTW  +  
Subjt:  KAHAKPAIAGSEINLSTSGVLVGLSYTEGTK----------------------RPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSSTWFNV--

Query:  -SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
         SV                     GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  -SV---------------------GSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein6.5e-2357.26Show/hide
Query:  PRGNRSSLQTGELAKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC
        PRGNR SLQT EL KT               V IELPVPD LPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELAKT---------------VEIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGGVTTWYQS
        WLHAVFRAK  GGPGGGVTTW  S
Subjt:  WLHAVFRAKLAGGPGGGVTTWYQS

A0A5A7VIY9 Uncharacterized protein1.2e-2152.24Show/hide
Query:  VGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV------------------------GS
        V +S  E  + PRGNRSSLQTGEL KT                 VEIELPVPDTLPTSAES  S+SSTW  +                          GS
Subjt:  VGLSYTEGTKRPRGNRSSLQTGELAKT-----------------VEIELPVPDTLPTSAESSRSSSSTWFNVSV------------------------GS

Query:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS
         GIVRGDDVCWLH VFRAK+AGGPGGGVT   QS
Subjt:  TGIVRGDDVCWLHAVFRAKLAGGPGGGVTTWYQS

A0A5D3CJX3 CCHC-type domain-containing protein1.2e-2458.87Show/hide
Query:  PRGNRSSLQTGELAKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC
        PRGNR SLQTGEL KTV                IELPVPDTLPTSAESS S+SSTW                           FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELAKTV---------------EIELPVPDTLPTSAESSRSSSSTW---------------------------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAKLAGGPGGGVTTWYQS
        WLHAVFRAK  GGPGGGVTTW  S
Subjt:  WLHAVFRAKLAGGPGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein1.3e-0427.34Show/hide
Query:  KLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVVKMMRGEEEDLSELKLITDEIIS
        K N DAS  E     G+GW++ +S G+++  G+GK   +M  +  E  A++  +++   +  +K I    E D+  V +++   + D   LK   D I S
Subjt:  KLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVVKMMRGEEEDLSELKLITDEIIS

Query:  LSSSLIEVEFLHCRRTANKTAHYVARSA
           S    EF+   R  N+ A  + + A
Subjt:  LSSSLIEVEFLHCRRTANKTAHYVARSA

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0526.14Show/hide
Query:  QIRRNRGAKRVEQWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVV
        Q+ RN       QWK P   + K N+DA+W  +    GIGW++ + +G ++ +G     R  +V   E +A+   + ++ ++   + I    ESD+  +V
Subjt:  QIRRNRGAKRVEQWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVV

Query:  KMMRGEEEDLSELKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSACNF
         ++   ++    L+   ++I  L     EV+F    R  NK A  +AR + +F
Subjt:  KMMRGEEEDLSELKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSACNF

AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.9e-0523.29Show/hide
Query:  AKRVEQWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEI---PLQIESDSIVVVKMMR
        + R ++W+KP   + K N D S        G+ W++ +S G+ ++ G GK   +  +K  E  A++  ++      C+ ++    ++ E D+I V +++R
Subjt:  AKRVEQWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEI---PLQIESDSIVVVKMMR

Query:  GEEEDLSELKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSA
         +E +   L+   + I   S +   V+F    R  N     +A+ A
Subjt:  GEEEDLSELKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSA

AT4G29090.1 Ribonuclease H-like superfamily protein4.2e-0627.66Show/hide
Query:  QWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVVKMMRGEEEDLSE
        +W+ P   + K N+DA+W       GIGWV+ +  G +  +G     +   V   E +A+   + S+ ++  +  I    ESDS V+++++   +E    
Subjt:  QWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVVKMMRGEEEDLSE

Query:  LKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSACNF
        LK    ++  L S   EV+F+   R  N  A  VAR + +F
Subjt:  LKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSACNF

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.1e-0626.53Show/hide
Query:  RNRGAKRVEQWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVVKMM
        RN    R  +W  P  +  K N DAS  E+    G+GW++ +S G++I  G+GK   +M  +  E   ++  +++   +   K I    E D+  + +M+
Subjt:  RNRGAKRVEQWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILKRLKSIKKYMCSKEIPLQIESDSIVVVKMM

Query:  RGEEEDLSELKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSA
          +  +   L+   D I S   S   +EF    R  N  A ++A+ A
Subjt:  RGEEEDLSELKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCGCGAAACAGAGTTGGAGACTAATAAGAAACCTGAACAGTTTTGTCTACAAGGTGCTCAGGGGTAAATACTTCAAGGACGGCAACTTCCTAGAGGCTCCAGAAGA
GTTGATCAAAGCTTGCTTCAGCTCGATTGATGTGGAAGATATCATCAATCTGCCCACTGGAGATAAAAGTGCTAAGGACGAGACCATTTGGCACCTCGACAAAAAAGGTT
CGTTCTCAGTAAAGAGTGCTTATCGCCTTGCTTTGGAAGTGACGGAAGTCAAGAAACTTCTCAATCGGACAGAAGCAAGTCCAGCCGAGATTGGAAGAGCCTCTGGCCTT
AGAGTAGGAACAGAGCACAAAATTCAAACAGAATCCCAGCAGAAGGTTCAATTCTCAGATCCATCGAAGACAGTATCAAAGAGTTTGAGGGCTCTTACCTTAATCGCCCA
AATTCGAAGAAATCGAGGAGCCAAGCGAGTCGAACAATGGAAAAAACCAAAGCCGAACTTTTGGAAATTAAATTCGGACGCTTCCTGGTTCGAAAAGGCTGGTTATGGAG
GCATTGGCTGGGTTGTGCATGACTCGAATGGATCCTTGATCAACCTCGGATTGGGAAAAACCACGCGGAAGATGGATGTTAAAATCTTGGAGGCGAAAGCCATTTTGAAA
AGGTTAAAATCGATAAAAAAATACATGTGCTCTAAGGAAATCCCGCTTCAAATCGAGTCTGACTCCATAGTTGTCGTTAAAATGATGCGGGGAGAAGAAGAAGATTTATC
GGAATTGAAATTGATCACTGACGAGATCATCTCCCTCTCCTCCAGCCTCATCGAAGTGGAGTTCCTCCATTGTAGAAGAACTGCAAACAAAACAGCCCACTATGTTGCAA
GATCTGCTTGTAATTTTGATTTTAGTTGTGGTCAGGAGCCTTCCCTGAAGAGGGAATTTGGACATTCATTTTGGGCACCTGATATTCCTTCGAGCCCAAAATTGGGAAAA
GCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTC
GAGTCTACAAACCGGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCA
ACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGG
TATCAGAGCCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTCGCGAAACAGAGTTGGAGACTAATAAGAAACCTGAACAGTTTTGTCTACAAGGTGCTCAGGGGTAAATACTTCAAGGACGGCAACTTCCTAGAGGCTCCAGAAGA
GTTGATCAAAGCTTGCTTCAGCTCGATTGATGTGGAAGATATCATCAATCTGCCCACTGGAGATAAAAGTGCTAAGGACGAGACCATTTGGCACCTCGACAAAAAAGGTT
CGTTCTCAGTAAAGAGTGCTTATCGCCTTGCTTTGGAAGTGACGGAAGTCAAGAAACTTCTCAATCGGACAGAAGCAAGTCCAGCCGAGATTGGAAGAGCCTCTGGCCTT
AGAGTAGGAACAGAGCACAAAATTCAAACAGAATCCCAGCAGAAGGTTCAATTCTCAGATCCATCGAAGACAGTATCAAAGAGTTTGAGGGCTCTTACCTTAATCGCCCA
AATTCGAAGAAATCGAGGAGCCAAGCGAGTCGAACAATGGAAAAAACCAAAGCCGAACTTTTGGAAATTAAATTCGGACGCTTCCTGGTTCGAAAAGGCTGGTTATGGAG
GCATTGGCTGGGTTGTGCATGACTCGAATGGATCCTTGATCAACCTCGGATTGGGAAAAACCACGCGGAAGATGGATGTTAAAATCTTGGAGGCGAAAGCCATTTTGAAA
AGGTTAAAATCGATAAAAAAATACATGTGCTCTAAGGAAATCCCGCTTCAAATCGAGTCTGACTCCATAGTTGTCGTTAAAATGATGCGGGGAGAAGAAGAAGATTTATC
GGAATTGAAATTGATCACTGACGAGATCATCTCCCTCTCCTCCAGCCTCATCGAAGTGGAGTTCCTCCATTGTAGAAGAACTGCAAACAAAACAGCCCACTATGTTGCAA
GATCTGCTTGTAATTTTGATTTTAGTTGTGGTCAGGAGCCTTCCCTGAAGAGGGAATTTGGACATTCATTTTGGGCACCTGATATTCCTTCGAGCCCAAAATTGGGAAAA
GCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGAACTAAGAGGCCAAGAGGAAATAGGTC
GAGTCTACAAACCGGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCA
ACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGG
TATCAGAGCCGTTAG
Protein sequenceShow/hide protein sequence
MLAKQSWRLIRNLNSFVYKVLRGKYFKDGNFLEAPEELIKACFSSIDVEDIINLPTGDKSAKDETIWHLDKKGSFSVKSAYRLALEVTEVKKLLNRTEASPAEIGRASGL
RVGTEHKIQTESQQKVQFSDPSKTVSKSLRALTLIAQIRRNRGAKRVEQWKKPKPNFWKLNSDASWFEKAGYGGIGWVVHDSNGSLINLGLGKTTRKMDVKILEAKAILK
RLKSIKKYMCSKEIPLQIESDSIVVVKMMRGEEEDLSELKLITDEIISLSSSLIEVEFLHCRRTANKTAHYVARSACNFDFSCGQEPSLKREFGHSFWAPDIPSSPKLGK
AHAKPAIAGSEINLSTSGVLVGLSYTEGTKRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTW
YQSR