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Spg030350 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030350
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold6:25302957..25310226
RNA-Seq ExpressionSpg030350
SyntenySpg030350
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-0441.56Show/hide
Query:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG
        MPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+F AK  GGPGG  +  R  +   +   G
Subjt:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-0436.96Show/hide
Query:  MPDTLPTSAESSRTKC---------FIS-----------MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEE
        +PDTLPTSAESS +           F+            M  + + FNV  G    +  D+V WLHA+FWAK AGGPGG  +  R  +   +
Subjt:  MPDTLPTSAESSRTKC---------FIS-----------MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEE

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]4.3e-0649.25Show/hide
Query:  MPDTLPTSAESSRT------KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG
        +PDTLPTSAES          C +S  M+  F+RFNV  G    +  DDV WLHA+F AK+AG P G
Subjt:  MPDTLPTSAESSRT------KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]9.0e-0441.77Show/hide
Query:  MPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG
        +PDTLPTSAESS                 + F S     M  + + FNV  G    +  DDV WLHA+F AK  GGPGG
Subjt:  MPDTLPTSAESS---------------RTKCFIS-----MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.3e-0441.56Show/hide
Query:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG
        MPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+F AK  GGPGG  +  R  +   +   G
Subjt:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase2.5e-0441.56Show/hide
Query:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG
        MPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+F AK  GGPGG  +  R  +   +   G
Subjt:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG

A0A5A7U9X4 DNA/RNA polymerases superfamily protein5.1e-0536.96Show/hide
Query:  MPDTLPTSAESSRTKC---------FIS-----------MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEE
        +PDTLPTSAESS +           F+            M  + + FNV  G    +  D+V WLHA+FWAK AGGPGG  +  R  +   +
Subjt:  MPDTLPTSAESSRTKC---------FIS-----------MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEE

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein5.7e-0449.21Show/hide
Query:  MPDTLPTSAES--SRTKCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG
        +PDTLPTSAES  S +  F +  M  + + FNV  G    +  DDV  LH +F AK AGGPGG
Subjt:  MPDTLPTSAES--SRTKCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG

A0A5D3C0X3 Retrotrans_gag domain-containing protein2.1e-0649.25Show/hide
Query:  MPDTLPTSAESSRT------KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG
        +PDTLPTSAES          C +S  M+  F+RFNV  G    +  DDV WLHA+F AK+AG P G
Subjt:  MPDTLPTSAESSRT------KCFIS--MISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGG

A0A5D3D150 Reverse transcriptase2.5e-0441.56Show/hide
Query:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG
        MPDTLPTSAESS +     +   F   +V+  G    +  DDV WLHA+F AK  GGPGG  +  R  +   +   G
Subjt:  MPDTLPTSAESSRTKCFISMISMFIRFNVQE-GQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTT
AGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTTGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGAAGGAAGAAGAAGAAGAAT
TTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTT
AGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTTGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAGCACTTGAGGGAGAGAGTGAAGAAGGAAGAAGAAGAAGAAT
TTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTAG
Protein sequenceShow/hide protein sequence
MPDTLPTSAESSRTKCFISMISMFIRFNVQEGQRVSLEEDDVRWLHAIFWAKLAGGPGGEHLRERVKKEEEEEFRGFEVEEDKKSSCKASHSRIWVQN