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Spg030358 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030358
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:25368045..25369769
RNA-Seq ExpressionSpg030358
SyntenySpg030358
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]1.0e-2461.06Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHA
        VEIELPV DTL TSAESS S+SSTWL+LY ES+  +      + +     +C  +GFRGFRCVVF +E  I  I MFIRF+VS+GSTGIVRG+DV W H 
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHA

Query:  VFRANLAGGPGGG
        VFRA  AGG GGG
Subjt:  VFRANLAGGPGGG

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]8.7e-2455.65Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIP---MISMFIRFSVSIGST
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV  +                        I C+     M  + + F+VS+GST
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIP---MISMFIRFSVSIGST

Query:  GIVRGDDVCWLHAVFRANLAGGPG
        GIVRGDDVCWLHAVFR   A  PG
Subjt:  GIVRGDDVCWLHAVFRANLAGGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.9e-2057.01Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANL
        VEIELPVPDTLPTSAESS S+SSTWLELY ESV  +   C      M +                    + + FSV +GSTGIVRGDDVCWLHAVFRA  
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANL

Query:  AGGPGGG
         GGPGGG
Subjt:  AGGPGGG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-2050Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V                           +E F   
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM

Query:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG
                      GIVR DDVCWLHAVFRA  AGGPGGG
Subjt:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-2050Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V                           +E F   
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM

Query:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG
                      GIVR DDVCWLHAVFRA  AGGPGGG
Subjt:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG

TrEMBL top hitse value%identityAlignment
A0A5A7UEC1 Uncharacterized protein5.0e-2561.06Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHA
        VEIELPV DTL TSAESS S+SSTWL+LY ES+  +      + +     +C  +GFRGFRCVVF +E  I  I MFIRF+VS+GSTGIVRG+DV W H 
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHA

Query:  VFRANLAGGPGGG
        VFRA  AGG GGG
Subjt:  VFRANLAGGPGGG

A0A5A7V638 Uncharacterized protein4.2e-2455.65Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIP---MISMFIRFSVSIGST
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TWLELY ESV  +                        I C+     M  + + F+VS+GST
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIP---MISMFIRFSVSIGST

Query:  GIVRGDDVCWLHAVFRANLAGGPG
        GIVRGDDVCWLHAVFR   A  PG
Subjt:  GIVRGDDVCWLHAVFRANLAGGPG

A0A5A7V9N3 Reverse transcriptase4.8e-2057.01Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANL
        VEIELPVPDTLPTSAESS S+SSTWLELY ESV  +   C      M +                    + + FSV +GSTGIVRGDDVCWLHAVFRA  
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANL

Query:  AGGPGGG
         GGPGGG
Subjt:  AGGPGGG

A0A5A7VMG9 Reverse transcriptase7.4e-2150Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V                           +E F   
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM

Query:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG
                      GIVR DDVCWLHAVFRA  AGGPGGG
Subjt:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG

A0A5D3DX39 Reverse transcriptase7.4e-2150Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTWLELY+E V                           +E F   
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPM

Query:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG
                      GIVR DDVCWLHAVFRA  AGGPGGG
Subjt:  ISMFIRFSVSIGSTGIVRGDDVCWLHAVFRANLAGGPGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGG
TGTTTCGTATAGAATGTTTTATACCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCC
GTCTTTCGGGCTAACCTAGCAGGTGGTCCGGGAGGGGGAGCAAGGGCTGGACATTTCTTGCTGAACAAGTCGCCAGCGTCGAGACGCTACGTCACAGCGTCGAGACGCCG
TGACGTCAATTTTCTTAGAGCCGAAGTTGTCGCAGCGTCGCGACGCTGTCGCGATTCTGGATTTTTCCTCGCTGATCACCTAGCGTCGAGACACTCCAGTCCTAGCGTCG
AGACGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGG
TGTTTCGTATAGAATGTTTTATACCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCC
GTCTTTCGGGCTAACCTAGCAGGTGGTCCGGGAGGGGGAGCAAGGGCTGGACATTTCTTGCTGAACAAGTCGCCAGCGTCGAGACGCTACGTCACAGCGTCGAGACGCCG
TGACGTCAATTTTCTTAGAGCCGAAGTTGTCGCAGCGTCGCGACGCTGTCGCGATTCTGGATTTTTCCTCGCTGATCACCTAGCGTCGAGACACTCCAGTCCTAGCGTCG
AGACGCTCTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIPMISMFIRFSVSIGSTGIVRGDDVCWLHA
VFRANLAGGPGGGARAGHFLLNKSPASRRYVTASRRRDVNFLRAEVVAASRRCRDSGFFLADHLASRHSSPSVETL