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Spg030363 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030363
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold6:25465540..25467063
RNA-Seq ExpressionSpg030363
SyntenySpg030363
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]1.5e-1858.88Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS--SIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVL
        MQSQPLQNLGA ++    LFGLSY E  +STGFSSKPGG LVFS  LSIL   +  +    +WPRGN  SLQT EL KT             PLSTLSVL
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS--SIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVL

Query:  RDNDAVV
        RDND VV
Subjt:  RDNDAVV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]6.2e-1754.55Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR---------RVR-------SSIWPRGNRSSLQTRELAKTPEAIWYR
        MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LVFS  LSIL   +          VR        S  PRGNR SLQTREL KT       
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR---------RVR-------SSIWPRGNRSSLQTRELAKTPEAIWYR

Query:  VHTGYIPLSTLSVLRDNDAVV
              PLSTLSVLRDN+ V+
Subjt:  VHTGYIPLSTLSVLRDNDAVV

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.4e-1553.51Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVR---------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIP
        MQS PL+NLGA ++    LFGLSY EG KSTGFSSKPG  LVFS  LSIL   +  +          S  PRGN+ SLQT EL KT             P
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVR---------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIP

Query:  LSTLSVLRDNDAVV
        LST SVL DNDAVV
Subjt:  LSTLSVLRDNDAVV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.4e-1657.55Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR-RVRSSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLR
        MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LV S  LSIL   +   +  + PRGNR SLQT EL KT              LSTLSVLR
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR-RVRSSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLR

Query:  DNDAVV
        DN+AV+
Subjt:  DNDAVV

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]6.4e-1449.61Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-------------SIWPRGNRSSLQTRELAKT------PEAI
        MQS+PLQNL A ++    LFGLSY EG KST FSSK GG LVFS  LSIL   +  +               I PRGNRSSLQT EL  T       E +
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-------------SIWPRGNRSSLQTRELAKT------PEAI

Query:  WYRVHTG-----YIPLSTLSVLRDNDAVV
          R++          LSTLSVLRDNDAVV
Subjt:  WYRVHTG-----YIPLSTLSVLRDNDAVV

TrEMBL top hitse value%identityAlignment
A0A5A7UEC1 Uncharacterized protein7.1e-1958.88Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS--SIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVL
        MQSQPLQNLGA ++    LFGLSY E  +STGFSSKPGG LVFS  LSIL   +  +    +WPRGN  SLQT EL KT             PLSTLSVL
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS--SIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVL

Query:  RDNDAVV
        RDND VV
Subjt:  RDNDAVV

A0A5A7UT17 CCHC-type domain-containing protein3.0e-1754.55Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR---------RVR-------SSIWPRGNRSSLQTRELAKTPEAIWYR
        MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LVFS  LSIL   +          VR        S  PRGNR SLQTREL KT       
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR---------RVR-------SSIWPRGNRSSLQTRELAKTPEAIWYR

Query:  VHTGYIPLSTLSVLRDNDAVV
              PLSTLSVLRDN+ V+
Subjt:  VHTGYIPLSTLSVLRDNDAVV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.6e-1553.51Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVR---------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIP
        MQS PL+NLGA ++    LFGLSY EG KSTGFSSKPG  LVFS  LSIL   +  +          S  PRGN+ SLQT EL KT             P
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVR---------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIP

Query:  LSTLSVLRDNDAVV
        LST SVL DNDAVV
Subjt:  LSTLSVLRDNDAVV

A0A5D3CJX3 CCHC-type domain-containing protein6.7e-1757.55Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR-RVRSSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLR
        MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LV S  LSIL   +   +  + PRGNR SLQT EL KT              LSTLSVLR
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR-RVRSSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLR

Query:  DNDAVV
        DN+AV+
Subjt:  DNDAVV

A0A5D3DE96 Uncharacterized protein3.1e-1449.61Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-------------SIWPRGNRSSLQTRELAKT------PEAI
        MQS+PLQNL A ++    LFGLSY EG KST FSSK GG LVFS  LSIL   +  +               I PRGNRSSLQT EL  T       E +
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-------------SIWPRGNRSSLQTRELAKT------PEAI

Query:  WYRVHTG-----YIPLSTLSVLRDNDAVV
          R++          LSTLSVLRDNDAVV
Subjt:  WYRVHTG-----YIPLSTLSVLRDNDAVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGCACAGGATTTTCGAGCAAACC
AGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACACGTCGAGTCCGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAAC
TAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCC
CCACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGCACAGGATTTTCGAGCAAACC
AGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACACGTCGAGTCCGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAAC
TAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCC
CCACTATGA
Protein sequenceShow/hide protein sequence
MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRSSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRA
PL