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Spg030364 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030364
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:25359555..25361618
RNA-Seq ExpressionSpg030364
SyntenySpg030364
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.7e-2447.65Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKRPRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTR
        MQSQPLQNLGA      V +GL Y EG KRPRGNR+SLQTG+LDKT              L TLSVL DNDAVV            L V D  P + ++ 
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKRPRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTR

Query:  LCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACGPGGGV
             T   L  F      +F       M  + + F+VS+GST IVRGD+VCWLH VF AK A GPGGGV
Subjt:  LCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACGPGGGV

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]6.7e-2640.87Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR---------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVL
        MQSQPLQNLGA      V +GLSY E  +                                  PRGN  SLQTG+LDKT             PL TLSVL
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR---------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVL

Query:  CDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCML-------------------------KGFRGFRCVVFRIECFISMISMFIRFSVSIGS
         DND VV            L VLD    + ++      T   L                         +GFRGFRCVVF +E  IS I MFIRF+VS+GS
Subjt:  CDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCML-------------------------KGFRGFRCVVFRIECFISMISMFIRFSVSIGS

Query:  TGIVRGDDVCWLHVVFRAKLACGPGGGVTT
        TGIVRG+DV W HVVFRAK A G GGGVT+
Subjt:  TGIVRGDDVCWLHVVFRAKLACGPGGGVTT

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.1e-1937Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKTPEAIWYR
        MQSQPLQNLGA      V + LSY EG K                                                PRGNR SLQT +LDKT       
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKTPEAIWYR

Query:  VHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDD
              PL TLSVL DN+ V+            L V D  P + ++      T   L     F  V   + C  +   M  + + F+VS+GSTGIVRGDD
Subjt:  VHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDD

Query:  VCWLHVVFRAKLACGPGGGVTTWYQSS
        VCWLH VFRAK   GPGGGVTTW  S+
Subjt:  VCWLHVVFRAKLACGPGGGVTTWYQSS

TYJ96574.1 uncharacterized protein E5676_scaffold791G00040 [Cucumis melo var. makuwa]1.8e-2338.79Show/hide
Query:  GANCQPL-VFYGLSYTEGIKR----------------------------------------------PRGNRSSLQTGKLDKT------PEAIWYRVHTG
        G NCQPL V + LSY EG KR                                              P GNR SLQ G+LDKT       E +  R++  
Subjt:  GANCQPL-VFYGLSYTEGIKR----------------------------------------------PRGNRSSLQTGKLDKT------PEAIWYRVHTG

Query:  -----YIPLLTLSVLCDNDAVVS-AGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCV--VFRIECFISMI--SMFIRFSVSI---GSTG
               PL TLSVL DN+A V  +  CLIHCQRLLKV DQ PV                  RG+ C+  +F ++CF+ +      +R +  +   GS  
Subjt:  -----YIPLLTLSVLCDNDAVVS-AGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCV--VFRIECFISMI--SMFIRFSVSI---GSTG

Query:  IVRGDDVCWLHVVFRAKLACGPGGGVTTWYQS
        IVRGDDV WLH VFRAK   GPGGGVTTWYQS
Subjt:  IVRGDDVCWLHVVFRAKLACGPGGGVTTWYQS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.9e-2240.09Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLC
        MQSQPLQNLGA      V + LSY EG K                                 PRGNR SLQTG+LDKT              L TLSVL 
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLC

Query:  DNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACG
        DN+AV+            L V D  P + ++      T   L     F  V   + C  +   M  + + F+VS+GSTGIVRGDDVCWLH VFRAK   G
Subjt:  DNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACG

Query:  PGGGVTTWYQSS
        PGGGVTTW  S+
Subjt:  PGGGVTTWYQSS

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein1.8e-2447.65Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKRPRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTR
        MQSQPLQNLGA      V +GL Y EG KRPRGNR+SLQTG+LDKT              L TLSVL DNDAVV            L V D  P + ++ 
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKRPRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTR

Query:  LCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACGPGGGV
             T   L  F      +F       M  + + F+VS+GST IVRGD+VCWLH VF AK A GPGGGV
Subjt:  LCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACGPGGGV

A0A5A7UEC1 Uncharacterized protein3.3e-2640.87Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR---------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVL
        MQSQPLQNLGA      V +GLSY E  +                                  PRGN  SLQTG+LDKT             PL TLSVL
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR---------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVL

Query:  CDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCML-------------------------KGFRGFRCVVFRIECFISMISMFIRFSVSIGS
         DND VV            L VLD    + ++      T   L                         +GFRGFRCVVF +E  IS I MFIRF+VS+GS
Subjt:  CDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCML-------------------------KGFRGFRCVVFRIECFISMISMFIRFSVSIGS

Query:  TGIVRGDDVCWLHVVFRAKLACGPGGGVTT
        TGIVRG+DV W HVVFRAK A G GGGVT+
Subjt:  TGIVRGDDVCWLHVVFRAKLACGPGGGVTT

A0A5A7UT17 CCHC-type domain-containing protein1.0e-1937Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKTPEAIWYR
        MQSQPLQNLGA      V + LSY EG K                                                PRGNR SLQT +LDKT       
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIK-----------------------------------------------RPRGNRSSLQTGKLDKTPEAIWYR

Query:  VHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDD
              PL TLSVL DN+ V+            L V D  P + ++      T   L     F  V   + C  +   M  + + F+VS+GSTGIVRGDD
Subjt:  VHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDD

Query:  VCWLHVVFRAKLACGPGGGVTTWYQSS
        VCWLH VFRAK   GPGGGVTTW  S+
Subjt:  VCWLHVVFRAKLACGPGGGVTTWYQSS

A0A5D3BC77 CCHC-type domain-containing protein8.9e-2438.79Show/hide
Query:  GANCQPL-VFYGLSYTEGIKR----------------------------------------------PRGNRSSLQTGKLDKT------PEAIWYRVHTG
        G NCQPL V + LSY EG KR                                              P GNR SLQ G+LDKT       E +  R++  
Subjt:  GANCQPL-VFYGLSYTEGIKR----------------------------------------------PRGNRSSLQTGKLDKT------PEAIWYRVHTG

Query:  -----YIPLLTLSVLCDNDAVVS-AGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCV--VFRIECFISMI--SMFIRFSVSI---GSTG
               PL TLSVL DN+A V  +  CLIHCQRLLKV DQ PV                  RG+ C+  +F ++CF+ +      +R +  +   GS  
Subjt:  -----YIPLLTLSVLCDNDAVVS-AGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCV--VFRIECFISMI--SMFIRFSVSI---GSTG

Query:  IVRGDDVCWLHVVFRAKLACGPGGGVTTWYQS
        IVRGDDV WLH VFRAK   GPGGGVTTWYQS
Subjt:  IVRGDDVCWLHVVFRAKLACGPGGGVTTWYQS

A0A5D3CJX3 CCHC-type domain-containing protein2.9e-2240.09Show/hide
Query:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLC
        MQSQPLQNLGA      V + LSY EG K                                 PRGNR SLQTG+LDKT              L TLSVL 
Subjt:  MQSQPLQNLGANCQP-LVFYGLSYTEGIKR--------------------------------PRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLC

Query:  DNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACG
        DN+AV+            L V D  P + ++      T   L     F  V   + C  +   M  + + F+VS+GSTGIVRGDDVCWLH VFRAK   G
Subjt:  DNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACG

Query:  PGGGVTTWYQSS
        PGGGVTTW  S+
Subjt:  PGGGVTTWYQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTACGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCT
ACAAACCGGGAAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGA
GTGCTGGGCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAA
GGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGG
TGACGATGTCTGTTGGCTTCACGTCGTCTTTCGGGCTAAGCTAGCATGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTTTTACGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAATAGGTCGAGTCT
ACAAACCGGGAAACTAGATAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTGA
GTGCTGGGCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAA
GGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGG
TGACGATGTCTGTTGGCTTCACGTCGTCTTTCGGGCTAAGCTAGCATGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MQSQPLQNLGANCQPLVFYGLSYTEGIKRPRGNRSSLQTGKLDKTPEAIWYRVHTGYIPLLTLSVLCDNDAVVSAGRCLIHCQRLLKVLDQAPVTFQTRLCQGCTMCMLK
GFRGFRCVVFRIECFISMISMFIRFSVSIGSTGIVRGDDVCWLHVVFRAKLACGPGGGVTTWYQSS