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Spg030371 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030371
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold6:25471603..25472524
RNA-Seq ExpressionSpg030371
SyntenySpg030371
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052217.1 hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]1.2e-1253Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE
        +TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S S         +  DDV WLH +F AK  GGPG GVT+  P T E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-1557.43Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +   + V +E         EDDV WLHA+F AK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG

Query:  V
        V
Subjt:  V

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]1.2e-1253Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE
        +TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S S         +  DDV WLH +F AK  GGPG GVT+  P T E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]2.5e-1356.52Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVT
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S S         +  DDV WLH++F AK A GPGGGVT
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-1557.43Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +   + V +E         EDDV WLHA+F AK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein6.0e-1353Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE
        +TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S S         +  DDV WLH +F AK  GGPG GVT+  P T E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE

A0A5A7VMG9 Reverse transcriptase7.6e-1657.43Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +   + V +E         EDDV WLHA+F AK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG

Query:  V
        V
Subjt:  V

A0A5D3BRJ2 Reverse transcriptase domain-containing protein6.0e-1353Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE
        +TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS S S S         +  DDV WLH +F AK  GGPG GVT+  P T E
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPE

A0A5D3CU23 Retrotrans_gag domain-containing protein1.2e-1356.52Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVT
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS S+S S         +  DDV WLH++F AK A GPGGGVT
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase7.6e-1657.43Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SS+  +   + V +E         EDDV WLHA+F AK AGGPGGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSSTFK-GGQRVSLE---------EDDVRWLHAIFLAKLAGGPGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCCAG
CTCCAGTTCAACGTTTAAGGGGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCTGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTG
TGACACTCGGAACACCACGAACTCCAGAAATGGATAGGGTCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCCAG
CTCCAGTTCAACGTTTAAGGGGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCTGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTG
TGACACTCGGAACACCACGAACTCCAGAAATGGATAGGGTCACTTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSSTFKGGQRVSLEEDDVRWLHAIFLAKLAGGPGGGVTLGTPRTPEMDRVT