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Spg030381 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030381
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold6:25549520..25550281
RNA-Seq ExpressionSpg030381
SyntenySpg030381
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8661093.1 hypothetical protein F3Y22_tig00116939pilonHSYRG00213 [Hibiscus syriacus]2.4e-0733.66Show/hide
Query:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE
        W+GR T++ ++  + L   A  W H++KN +MPT+H+ T+S+ R++L++ I    PID+G I+   +     K    +  P+L+T LCR   +     DE
Subjt:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE

Query:  I
        I
Subjt:  I

KAE8676815.1 hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus]2.4e-0732.67Show/hide
Query:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE
        W+GR T++ ++  + L   A  W H++K+ +MPT+H+ T+S+ R++L++ I    PID+G I+   +     K    +  P+L+T LCR   +     DE
Subjt:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE

Query:  I
        I
Subjt:  I

PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]8.2e-0833.33Show/hide
Query:  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTK
        + + L  +A  GA W+     A T     L   A  W H++K+H++PTTH  T+S  R++L++ +  G  I++G ++ + +R    +  G +F PSL+T+
Subjt:  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTK

Query:  LCRMA
        LCR A
Subjt:  LCRMA

XP_024971944.1 uncharacterized protein LOC112510826 [Cynara cardunculus var. scolymus]1.8e-0729.36Show/hide
Query:  IARPGANWDGRGT--AKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAG
        + + G  WD       +T +A  L   A  W+++I+  + PTTHD+++S+ +++L+Y +  G  I++G ++  ++   + + +G +F PSL+ KL   AG
Subjt:  IARPGANWDGRGT--AKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAG

Query:  IVPAPPDEI
         VP   D++
Subjt:  IVPAPPDEI

XP_024995361.1 formin-like protein 3 [Cynara cardunculus var. scolymus]1.5e-0931.48Show/hide
Query:  LAAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMA
        LA +A  G  W  +G A+ LK Q+L  EA  W +++++ I P +HD  L + RV+++Y I    P D+G ++ ++++    +  G +  PSL+ +L + A
Subjt:  LAAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMA

Query:  GIVPAPPD
         ++  P D
Subjt:  GIVPAPPD

TrEMBL top hitse value%identityAlignment
A0A2G9FVU6 Uncharacterized protein2.0e-0730.5Show/hide
Query:  AAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGI-MFCPSLVTKLCRMA
        A I RP  +W+       +    L  EA  W+ +I   + P++H + +S  R +L+Y I  G+P+D+G  ++ ++ ++      + M+ PSLVT LC+  
Subjt:  AAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGI-MFCPSLVTKLCRMA

Query:  GIVPAPPDEIRAMRQEPTPAAENQPPTPEPQQKKRRKQTAR
        G+V  P DE+  ++ + T   EN+ P P P    RR++  R
Subjt:  GIVPAPPDEIRAMRQEPTPAAENQPPTPEPQQKKRRKQTAR

A0A2P5AGA5 Uncharacterized protein (Fragment)4.0e-0833.33Show/hide
Query:  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTK
        + + L  +A  GA W+     A T     L   A  W H++K+H++PTTH  T+S  R++L++ +  G  I++G ++ + +R    +  G +F PSL+T+
Subjt:  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTK

Query:  LCRMA
        LCR A
Subjt:  LCRMA

A0A2P5DXM3 Uncharacterized protein1.5e-0732.38Show/hide
Query:  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTK
        + + L  +A  GA W+     A T     L   A  W H++K+ ++PTTH   +S  R++L++ + NG  I++G ++ + +R    +  G +F PSL+T+
Subjt:  IFSSLAAIARPGANWD-GRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTK

Query:  LCRMA
        LCR A
Subjt:  LCRMA

A0A6A2WM54 Uncharacterized protein1.1e-0733.66Show/hide
Query:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE
        W+GR T++ ++  + L   A  W H++KN +MPT+H+ T+S+ R++L++ I    PID+G I+   +     K    +  P+L+T LCR   +     DE
Subjt:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE

Query:  I
        I
Subjt:  I

A0A6A2Y697 Reverse transcriptase domain-containing protein1.1e-0732.67Show/hide
Query:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE
        W+GR T++ ++  + L   A  W H++K+ +MPT+H+ T+S+ R++L++ I    PID+G I+   +     K    +  P+L+T LCR   +     DE
Subjt:  WDGRGTAK-TLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTYKPKGIMFCPSLVTKLCRMAGIVPAPPDE

Query:  I
        I
Subjt:  I

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAAAAAGATCTTACCCCCCAATATCTATGTCGATACCTCGAAAATAGCGATATTTCGATTAATATCGGTGATTTTTTCATCCTTGGCTGCGATAGCTCGACCTGG
CGCCAATTGGGATGGGCGTGGAACTGCCAAGACCCTAAAGGCGCAGTGGCTAGACTTCGAGGCCACCACATGGATGCATTGGATCAAAAATCACATCATGCCCACAACGC
ATGATGCCACTTTGTCAATCCCGCGGGTGGTCCTCGTATATCGTATCACCAATGGGATCCCAATTGACCTGGGCCCCATTCTCTCCAATTCCCTGCGCCAGACTACCTAC
AAGCCTAAGGGAATAATGTTCTGCCCAAGCCTTGTCACCAAACTCTGTCGCATGGCTGGCATTGTCCCCGCGCCACCTGATGAAATACGAGCCATGCGTCAAGAGCCAAC
CCCTGCGGCAGAAAATCAGCCCCCAACTCCTGAACCCCAGCAAAAGAAGAGGCGCAAGCAAACCGCCCGCCGGAATCCTTCAGTGGCGGCAAGGCAAGTGCAAGAAGTGC
TTCCAACGCAGGAAACTATTGTCTGCGCTCTCAACCAACAAACCTTGCCGCCACTCCCAGAATCGCCCGTGCGTCGGCCAACTTTTCCAGAAGTGTGCATGGAGACCGTG
CATCAATTTCAAGGCCGCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAAAAAAGATCTTACCCCCCAATATCTATGTCGATACCTCGAAAATAGCGATATTTCGATTAATATCGGTGATTTTTTCATCCTTGGCTGCGATAGCTCGACCTGG
CGCCAATTGGGATGGGCGTGGAACTGCCAAGACCCTAAAGGCGCAGTGGCTAGACTTCGAGGCCACCACATGGATGCATTGGATCAAAAATCACATCATGCCCACAACGC
ATGATGCCACTTTGTCAATCCCGCGGGTGGTCCTCGTATATCGTATCACCAATGGGATCCCAATTGACCTGGGCCCCATTCTCTCCAATTCCCTGCGCCAGACTACCTAC
AAGCCTAAGGGAATAATGTTCTGCCCAAGCCTTGTCACCAAACTCTGTCGCATGGCTGGCATTGTCCCCGCGCCACCTGATGAAATACGAGCCATGCGTCAAGAGCCAAC
CCCTGCGGCAGAAAATCAGCCCCCAACTCCTGAACCCCAGCAAAAGAAGAGGCGCAAGCAAACCGCCCGCCGGAATCCTTCAGTGGCGGCAAGGCAAGTGCAAGAAGTGC
TTCCAACGCAGGAAACTATTGTCTGCGCTCTCAACCAACAAACCTTGCCGCCACTCCCAGAATCGCCCGTGCGTCGGCCAACTTTTCCAGAAGTGTGCATGGAGACCGTG
CATCAATTTCAAGGCCGCGAATAG
Protein sequenceShow/hide protein sequence
MVKKILPPNIYVDTSKIAIFRLISVIFSSLAAIARPGANWDGRGTAKTLKAQWLDFEATTWMHWIKNHIMPTTHDATLSIPRVVLVYRITNGIPIDLGPILSNSLRQTTY
KPKGIMFCPSLVTKLCRMAGIVPAPPDEIRAMRQEPTPAAENQPPTPEPQQKKRRKQTARRNPSVAARQVQEVLPTQETIVCALNQQTLPPLPESPVRRPTFPEVCMETV
HQFQGRE