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Spg030390 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030390
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:26274283..26279553
RNA-Seq ExpressionSpg030390
SyntenySpg030390
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037787.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-0656.45Show/hide
Query:  VYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRG
        V+KLN KLY+VEIELPV DTLPTSAESS    +    V    DDV WL  +FR +   GP G
Subjt:  VYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRG

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-0733.68Show/hide
Query:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL
        Q G+QV L+     W   + R +  EHRI   + +   F+ F++      V+K N KLY                 VVEIELPVPDTLPTSA   ES+S 
Subjt:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL

Query:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY
        T+ E                            G    +  DDV WLHA+FR + A GP GGVT    +SR+S             T PSY
Subjt:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.9e-0762.07Show/hide
Query:  VVEIELPVPDTLPTSAESSSLTFQEGQRVS--LEEDDVRWLHAIFRTELASGPRGGVT
        VVEIELPVPDTLPTSAES    F+   R +  +  DDV WLHA+FR + A GP GGVT
Subjt:  VVEIELPVPDTLPTSAESSSLTFQEGQRVS--LEEDDVRWLHAIFRTELASGPRGGVT

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]2.9e-0754.29Show/hide
Query:  FEHSGVYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRGGVT
        F  S +  L+    VVEIELPV DTLPTSAESS    +    V    DDV WLH++FR + ASGP GGVT
Subjt:  FEHSGVYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRGGVT

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.7e-0733.68Show/hide
Query:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL
        Q G+QV L+     W   + R +  EHRI   + +   F+ F++      V+K N KLY                 VVEIELPVPDTLPTSA   ES+S 
Subjt:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL

Query:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY
        T+ E                            G    +  DDV WLHA+FR + A GP GGVT    +SR+S             T PSY
Subjt:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase8.4e-0833.68Show/hide
Query:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL
        Q G+QV L+     W   + R +  EHRI   + +   F+ F++      V+K N KLY                 VVEIELPVPDTLPTSA   ES+S 
Subjt:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL

Query:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY
        T+ E                            G    +  DDV WLHA+FR + A GP GGVT    +SR+S             T PSY
Subjt:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.9e-0762.07Show/hide
Query:  VVEIELPVPDTLPTSAESSSLTFQEGQRVS--LEEDDVRWLHAIFRTELASGPRGGVT
        VVEIELPVPDTLPTSAES    F+   R +  +  DDV WLHA+FR + A GP GGVT
Subjt:  VVEIELPVPDTLPTSAESSSLTFQEGQRVS--LEEDDVRWLHAIFRTELASGPRGGVT

A0A5D3CU23 Retrotrans_gag domain-containing protein1.4e-0754.29Show/hide
Query:  FEHSGVYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRGGVT
        F  S +  L+    VVEIELPV DTLPTSAESS    +    V    DDV WLH++FR + ASGP GGVT
Subjt:  FEHSGVYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRGGVT

A0A5D3D150 Reverse transcriptase8.4e-0833.68Show/hide
Query:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL
        Q G+QV L+     W   + R +  EHRI   + +   F+ F++      V+K N KLY                 VVEIELPVPDTLPTSA   ES+S 
Subjt:  QQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTRRISSFLWFFEHSG---VYKLNPKLY-----------------VVEIELPVPDTLPTSA---ESSSL

Query:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY
        T+ E                            G    +  DDV WLHA+FR + A GP GGVT    +SR+S             T PSY
Subjt:  TFQE----------------------------GQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSY

A0A5D3DVK1 Ty3-gypsy retrotransposon protein9.3e-0756.45Show/hide
Query:  VYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRG
        V+KLN KLY+VEIELPV DTLPTSAESS    +    V    DDV WL  +FR +   GP G
Subjt:  VYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTGGATTTTCTATGTTCGGGGGATTTATCCATTGGGAATCACGTTTTCATTCCTTCAGGCCAAAAGGAAATAGGCCGAGTCTACAGACCAGGGAACAAGCCAAG
ACTTTATGTCAGGGCTGCAGTTCCTGTATGTCTAAAGGTTTCCAAGGTTCTGCTGTGTTGTGTTGCATATGTAAAGTATTCCATATCTGAGATAGCATGTTTATCAGGTT
CAACGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCTCGGACTAAGCTAGCAGAGCACAGGATTTTCGTGCAAACCAGG
AGGATCTCTAGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATGTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGCTCCAGTTTAACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGATGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAAGTGGTCCGA
GAGGGGGTGTGACAAGGGCTTTTATCTCGTCCCGTAACTCAAATCTGTATTCTGATGCGCAAATTGCTTACCGCAAGTGTACGGGCCCAAGTTATAATATAGTGATTAAA
AATCGAATGTCGTCCTCTGGATTGCGTCGAGACGCTTTGGACATAGTGTCTCGACGCTGTGTCATGCGTGCCCTAATTATTTCCGGAATGTTTGCAGCGTTGAGACGCTG
TGGAGGTAGCGTCTCGACGCTGCCTCGATCTCGCGCCTCTCCTGATTATTGGCTAGCGTTGAGACGCTCCAAGGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATCTGGATTTTCTATGTTCGGGGGATTTATCCATTGGGAATCACGTTTTCATTCCTTCAGGCCAAAAGGAAATAGGCCGAGTCTACAGACCAGGGAACAAGCCAAG
ACTTTATGTCAGGGCTGCAGTTCCTGTATGTCTAAAGGTTTCCAAGGTTCTGCTGTGTTGTGTTGCATATGTAAAGTATTCCATATCTGAGATAGCATGTTTATCAGGTT
CAACGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCTCGGACTAAGCTAGCAGAGCACAGGATTTTCGTGCAAACCAGG
AGGATCTCTAGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCTATGTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGCTCCAGTTTAACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGATGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAAGTGGTCCGA
GAGGGGGTGTGACAAGGGCTTTTATCTCGTCCCGTAACTCAAATCTGTATTCTGATGCGCAAATTGCTTACCGCAAGTGTACGGGCCCAAGTTATAATATAGTGATTAAA
AATCGAATGTCGTCCTCTGGATTGCGTCGAGACGCTTTGGACATAGTGTCTCGACGCTGTGTCATGCGTGCCCTAATTATTTCCGGAATGTTTGCAGCGTTGAGACGCTG
TGGAGGTAGCGTCTCGACGCTGCCTCGATCTCGCGCCTCTCCTGATTATTGGCTAGCGTTGAGACGCTCCAAGGGCTAG
Protein sequenceShow/hide protein sequence
MNLDFLCSGDLSIGNHVFIPSGQKEIGRVYRPGNKPRLYVRAAVPVCLKVSKVLLCCVAYVKYSISEIACLSGSTVQQGQQVSLEEDDVCWLHAISRTKLAEHRIFVQTR
RISSFLWFFEHSGVYKLNPKLYVVEIELPVPDTLPTSAESSSLTFQEGQRVSLEEDDVRWLHAIFRTELASGPRGGVTRAFISSRNSNLYSDAQIAYRKCTGPSYNIVIK
NRMSSSGLRRDALDIVSRRCVMRALIISGMFAALRRCGGSVSTLPRSRASPDYWLALRRSKG