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Spg030393 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030393
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:25355641..25356401
RNA-Seq ExpressionSpg030393
SyntenySpg030393
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]5.4e-0961.97Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV
        MTEILS RLYGTVCTQ                 VEIEL  P+TLPTSAESS S+SSYF NQV+SGLH V V
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.4e-0960.87Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPEPNTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY
        MTEILS RLYGTVCTQV+IELP P+TLPTSAESS S+ +                YF NQVMSGLH V+
Subjt:  MTEILSPRLYGTVCTQVEIELPEPNTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]6.3e-1061.43Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVY
        MTEILS RL+GTVCTQ                 VEIELP P+TLPTS ESS S+SSYF NQVMSGLH V+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVY

TYK12219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-0961.97Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV
        MTEILS RLYGTVCTQ                 VEIEL  P+TLPTSAESS S+SSYF NQV+SGLH V V
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]8.3e-1061.97Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV
        MTEILS RLYGTVCT                  VEIELP P+ LPTSAESS S+SSYF NQVMSGL+ VYV
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV

TrEMBL top hitse value%identityAlignment
A0A5A7U9T8 Uncharacterized protein2.6e-0961.97Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV
        MTEILS RLYGTVCTQ                 VEIEL  P+TLPTSAESS S+SSYF NQV+SGLH V V
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV

A0A5A7V638 Uncharacterized protein6.8e-1060.87Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPEPNTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY
        MTEILS RLYGTVCTQV+IELP P+TLPTSAESS S+ +                YF NQVMSGLH V+
Subjt:  MTEILSPRLYGTVCTQVEIELPEPNTLPTSAESSRSSSS----------------YFPNQVMSGLHHVY

A0A5D3BMJ4 Retrotrans_gag domain-containing protein3.1e-1061.43Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVY
        MTEILS RL+GTVCTQ                 VEIELP P+TLPTS ESS S+SSYF NQVMSGLH V+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVY

A0A5D3CPH9 Ty3-gypsy retrotransposon protein2.6e-0961.97Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV
        MTEILS RLYGTVCTQ                 VEIEL  P+TLPTSAESS S+SSYF NQV+SGLH V V
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV

A0A5D3DE96 Uncharacterized protein4.0e-1061.97Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV
        MTEILS RLYGTVCT                  VEIELP P+ LPTSAESS S+SSYF NQVMSGL+ VYV
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGAGCCTAATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATG
ATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGAGCCTAATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCTATG
ATTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPEPNTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFPWIPLCGVSYRMFYIYD