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Spg030400 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030400
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold6:25726867..25731284
RNA-Seq ExpressionSpg030400
SyntenySpg030400
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.8e-2956.13Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVKGF
        PRGNR+SLQTGELDKT              LSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS                YF NQVMSGLH V     
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVKGF

Query:  RGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
                              FNVSVGST IVRGD+VCWLH VF AK AGGPGG
Subjt:  RGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]4.6e-4058.1Show/hide
Query:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVK
        +WPRGN  SLQTGELDKT             PLSTLSVLRDND VVEIELP+ DTL TSAESS S+SS                Y P+ VM+    V  +
Subjt:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVK

Query:  GFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGGVPSAPLMNNLFVVQPTNRSHSR
        GFRGFRCVVFH+E  IS I MFIRFNVSVGSTGIVRG+DV W HVVFRAK AGG GG  ++  M +L +V   +  HSR
Subjt:  GFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGGVPSAPLMNNLFVVQPTNRSHSR

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]8.2e-2954.43Show/hide
Query:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV
        D+  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS                YF NQVMS LH V  
Subjt:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV

Query:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
                                 F+V VGSTGIVRGDDVCWLH VFRAK  GGPGG
Subjt:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-3161.87Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVKGFRGFRCVVFHIECFISM
        PRGN+ SLQTGELDKT             PLST SVL DNDAVVEIEL +PDTLPTSAES  S+SSYF NQVMSGLH V                     
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVKGFRGFRCVVFHIECFISM

Query:  ISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
              FNVSVGSTGIVRGDDVC LHVVFRAK AGGPGG
Subjt:  ISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]8.2e-2954.43Show/hide
Query:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV
        D+  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS                YF NQVMS LH V  
Subjt:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV

Query:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
                                 F+V VGSTGIVRGDDVCWLH VFRAK  GGPGG
Subjt:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.3e-2956.13Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVKGF
        PRGNR+SLQTGELDKT              LSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS                YF NQVMSGLH V     
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVKGF

Query:  RGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
                              FNVSVGST IVRGD+VCWLH VF AK AGGPGG
Subjt:  RGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

A0A5A7UEC1 Uncharacterized protein2.2e-4058.1Show/hide
Query:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVK
        +WPRGN  SLQTGELDKT             PLSTLSVLRDND VVEIELP+ DTL TSAESS S+SS                Y P+ VM+    V  +
Subjt:  LWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYVK

Query:  GFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGGVPSAPLMNNLFVVQPTNRSHSR
        GFRGFRCVVFH+E  IS I MFIRFNVSVGSTGIVRG+DV W HVVFRAK AGG GG  ++  M +L +V   +  HSR
Subjt:  GFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGGVPSAPLMNNLFVVQPTNRSHSR

A0A5A7V9N3 Reverse transcriptase4.0e-2954.43Show/hide
Query:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV
        D+  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS                YF NQVMS LH V  
Subjt:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV

Query:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
                                 F+V VGSTGIVRGDDVCWLH VFRAK  GGPGG
Subjt:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.5e-3161.87Show/hide
Query:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVKGFRGFRCVVFHIECFISM
        PRGN+ SLQTGELDKT             PLST SVL DNDAVVEIEL +PDTLPTSAES  S+SSYF NQVMSGLH V                     
Subjt:  PRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVKGFRGFRCVVFHIECFISM

Query:  ISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
              FNVSVGSTGIVRGDDVC LHVVFRAK AGGPGG
Subjt:  ISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein4.0e-2954.43Show/hide
Query:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV
        D+  RGNRSSLQ+GELD T             PLSTLSVLRDNDAVVEIELP+PDTLPTSAESS S+SS                YF NQVMS LH V  
Subjt:  DLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSS----------------YFPNQVMSGLHHVYV

Query:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG
                                 F+V VGSTGIVRGDDVCWLH VFRAK  GGPGG
Subjt:  KGFRGFRCVVFHIECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGAAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAGCTAGATAAGACTCCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATA
GAATGTTTTATATCCATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGTCGTCTTTCGGGC
TAAGCTAGCAGGTGGTCCGGGAGGGGTTCCCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAACAAACAGAAGTCACTCTCGTGCCATAGAGAGGGTTGGGC
CCATTGTTCAAGTCCCGGAGACACCATTTAAGGGAACACACCTCTACTTACCCTGGGGTTGGGAAGGAGTGAATTCCATCATGTGTTATTATGTTCCCAGCTCCCCACTC
GGTATTAAAAACAGAGGAAAAACTGGAATTCCCCAGAAATGTGACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTATGGAAAAACAGAGTCTGTTCCGCG
TCGCACGTGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGCGGTTTTGACCCCGAAACTGACTGGGCAACCTTCCAGCACCTATTTCGCAGCTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGAAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAGCTAGATAAGACTCCCGAGGCTATATG
GTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTG
CTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATA
GAATGTTTTATATCCATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCGACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGTCGTCTTTCGGGC
TAAGCTAGCAGGTGGTCCGGGAGGGGTTCCCAGTGCTCCTCTAATGAACAACCTGTTTGTGGTCCAACCAACAAACAGAAGTCACTCTCGTGCCATAGAGAGGGTTGGGC
CCATTGTTCAAGTCCCGGAGACACCATTTAAGGGAACACACCTCTACTTACCCTGGGGTTGGGAAGGAGTGAATTCCATCATGTGTTATTATGTTCCCAGCTCCCCACTC
GGTATTAAAAACAGAGGAAAAACTGGAATTCCCCAGAAATGTGACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTATGGAAAAACAGAGTCTGTTCCGCG
TCGCACGTGGGTCGTTGTTGACGAGTCTTCTTCGCACCTAACTGGCGGTTTTGACCCCGAAACTGACTGGGCAACCTTCCAGCACCTATTTCGCAGCTCATAA
Protein sequenceShow/hide protein sequence
MENRAQDFRAKQKDLWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVEIELPMPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVKGFRGFRCVVFHI
ECFISMISMFIRFNVSVGSTGIVRGDDVCWLHVVFRAKLAGGPGGVPSAPLMNNLFVVQPTNRSHSRAIERVGPIVQVPETPFKGTHLYLPWGWEGVNSIMCYYVPSSPL
GIKNRGKTGIPQKCDRISGKAKMKCDRIYGKTESVPRRTWVVVDESSSHLTGGFDPETDWATFQHLFRSS