; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030401 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030401
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Genome locationscaffold6:26463351..26464068
RNA-Seq ExpressionSpg030401
SyntenySpg030401
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]2.7e-0529.47Show/hide
Query:  MWSLWNARNK--TEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAA-----------------------WNDS
        +W +W  RNK   E     P  A   K++   F +     + +P+ S  RS    G WI    + +KLN+DA+                       W  S
Subjt:  MWSLWNARNK--TEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAA-----------------------WNDS

Query:  KSCGGL-----AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIA
         +  G+     A A+L GM+A+ D   ++   LEV SD L++I++LNG   + S T+ I   IL  A     V F  C R  N  AH +A
Subjt:  KSCGGL-----AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]7.8e-0526.86Show/hide
Query:  MWSLWNARNKTEH-TNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGLAKAILEGM-QAILDTC--
        +WS+W  RN+  H T   P +  ++   E +  +         +        + G W     + WKLN DA W DS   GGL   + +   + I+  C  
Subjt:  MWSLWNARNKTEH-TNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGLAKAILEGM-QAILDTC--

Query:  -------VQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIARHCC
               ++  I +E+ESD LE++ I+N  ++ L+E   I + I      +    F H     N  AH IAR  C
Subjt:  -------VQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIARHCC

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]7.8e-0526.8Show/hide
Query:  WSLWNARN----KTEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASR-YRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGL---------------
        W +WN RN    + EH++       L K +       E  Y S+ S S  +++  ++  W     + W LN+DA+W+DS   GG+               
Subjt:  WSLWNARN----KTEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASR-YRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGL---------------

Query:  --------------AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIAR
                      A AILEG++ + +  V R  PL +E+D+ E+  +LN +  DL++T  + + IL+L      + F    R  N  AH +A+
Subjt:  --------------AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIAR

TrEMBL top hitse value%identityAlignment
A0A6J1D4B6 uncharacterized protein LOC1110171813.8e-0526.86Show/hide
Query:  MWSLWNARNKTEH-TNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGLAKAILEGM-QAILDTC--
        +WS+W  RN+  H T   P +  ++   E +  +         +        + G W     + WKLN DA W DS   GGL   + +   + I+  C  
Subjt:  MWSLWNARNKTEH-TNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGLAKAILEGM-QAILDTC--

Query:  -------VQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIARHCC
               ++  I +E+ESD LE++ I+N  ++ L+E   I + I      +    F H     N  AH IAR  C
Subjt:  -------VQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIARHCC

A0A6J1DNV9 uncharacterized protein LOC1110224033.8e-0526.8Show/hide
Query:  WSLWNARN----KTEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASR-YRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGL---------------
        W +WN RN    + EH++       L K +       E  Y S+ S S  +++  ++  W     + W LN+DA+W+DS   GG+               
Subjt:  WSLWNARN----KTEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASR-YRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGL---------------

Query:  --------------AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIAR
                      A AILEG++ + +  V R  PL +E+D+ E+  +LN +  DL++T  + + IL+L      + F    R  N  AH +A+
Subjt:  --------------AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIAR

A0A803L9N8 Uncharacterized protein1.3e-0529.47Show/hide
Query:  MWSLWNARNK--TEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAA-----------------------WNDS
        +W +W  RNK   E     P  A   K++   F +     + +P+ S  RS    G WI    + +KLN+DA+                       W  S
Subjt:  MWSLWNARNK--TEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAA-----------------------WNDS

Query:  KSCGGL-----AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIA
         +  G+     A A+L GM+A+ D   ++   LEV SD L++I++LNG   + S T+ I   IL  A     V F  C R  N  AH +A
Subjt:  KSCGGL-----AKAILEGMQAILDTCVQRKIPLEVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIA

A0A803QL79 Uncharacterized protein2.4e-0425.48Show/hide
Query:  MWSLWNARNKTEH---TNSIP-----TAAFLQ-------KSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGLAKAI
        MW +W+ RN   H   T  +P        +L+       +S     + L        +A+ + +  +Q  WIA  P   KLN+DAA N S S  GL   +
Subjt:  MWSLWNARNKTEH---TNSIP-----TAAFLQ-------KSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGLAKAI

Query:  L--------------------EGMQA-----ILDTCVQRKIPL-EVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCI
                             E M+A      L T +Q ++P+  +E+D+L +++ L      LS   AI   +  L S        H +R+ N+EAH +
Subjt:  L--------------------EGMQA-----ILDTCVQRKIPL-EVESDALEIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCI

Query:  ARHCCNLD
        A+    +D
Subjt:  ARHCCNLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAGTCTATGGAATGCTAGGAACAAAACAGAGCATACAAATTCCATCCCAACAGCAGCTTTTCTTCAGAAAAGTATAGAGAGAGAGTTTAAAAAGTTGGAAGAATG
TTACATCTCAAAGCCGTCTGCGAGCAGATATCGGAGCCAAGCGAGTCAGGGTACTTGGATAGCCCTGAAGCCAAACGCCTGGAAATTGAACTCTGATGCGGCGTGGAACG
ACTCAAAATCTTGCGGGGGCTTAGCCAAAGCAATTTTGGAAGGTATGCAAGCGATTTTAGATACCTGTGTGCAGCGCAAAATTCCTCTTGAGGTTGAATCTGATGCGTTA
GAGATCATCAAGATCTTGAACGGAGAAGCGGTTGATTTATCGGAGACGAAGGCGATTACGGACTCCATCCTTCACCTTGCCTCTCGGATGATTGAAGTTGACTTTCACCA
TTGTTACAGAGCCTTGAATTCAGAAGCCCACTGCATTGCAAGGCATTGTTGTAATCTAGATTTTGATTTTTCTTTTGATTCCGACCAGGCGTCTTCCCCTTTGCGGGATT
CTGGGCATTTTTTTGTAGCCCCTGGTATTTTGTTGAACGGTTTTCCCTCGAATTATGAGGGTGGTTTGGTTGATGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGAGTCTATGGAATGCTAGGAACAAAACAGAGCATACAAATTCCATCCCAACAGCAGCTTTTCTTCAGAAAAGTATAGAGAGAGAGTTTAAAAAGTTGGAAGAATG
TTACATCTCAAAGCCGTCTGCGAGCAGATATCGGAGCCAAGCGAGTCAGGGTACTTGGATAGCCCTGAAGCCAAACGCCTGGAAATTGAACTCTGATGCGGCGTGGAACG
ACTCAAAATCTTGCGGGGGCTTAGCCAAAGCAATTTTGGAAGGTATGCAAGCGATTTTAGATACCTGTGTGCAGCGCAAAATTCCTCTTGAGGTTGAATCTGATGCGTTA
GAGATCATCAAGATCTTGAACGGAGAAGCGGTTGATTTATCGGAGACGAAGGCGATTACGGACTCCATCCTTCACCTTGCCTCTCGGATGATTGAAGTTGACTTTCACCA
TTGTTACAGAGCCTTGAATTCAGAAGCCCACTGCATTGCAAGGCATTGTTGTAATCTAGATTTTGATTTTTCTTTTGATTCCGACCAGGCGTCTTCCCCTTTGCGGGATT
CTGGGCATTTTTTTGTAGCCCCTGGTATTTTGTTGAACGGTTTTCCCTCGAATTATGAGGGTGGTTTGGTTGATGGTTAG
Protein sequenceShow/hide protein sequence
MWSLWNARNKTEHTNSIPTAAFLQKSIEREFKKLEECYISKPSASRYRSQASQGTWIALKPNAWKLNSDAAWNDSKSCGGLAKAILEGMQAILDTCVQRKIPLEVESDAL
EIIKILNGEAVDLSETKAITDSILHLASRMIEVDFHHCYRALNSEAHCIARHCCNLDFDFSFDSDQASSPLRDSGHFFVAPGILLNGFPSNYEGGLVDG