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Spg030410 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030410
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold6:24512141..24522207
RNA-Seq ExpressionSpg030410
SyntenySpg030410
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-1555.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++S       + E   V +        EDDV WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG

Query:  GV
        GV
Subjt:  GV

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]6.6e-1245.05Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSI-------------CLSSSTFQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILS +LY TVCT                  VEIELPVPDTLPTSAES   + +             C        G    +  DDV WLHA+FRAK+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSI-------------CLSSSTFQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGGVTVW
        AG P GGVT W
Subjt:  AGGPGGGVTVW

TYK06355.1 uncharacterized protein E5676_scaffold163G00340 [Cucumis melo var. makuwa]3.9e-1250Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW
        MTEILS  LYGTVCTQ                 VEIELPVPDTLPTS   ++T            G    + ED+V WL A+FRAK  GGPGGGVT W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]5.4e-1453.06Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S               +  DDV WLH++FRAK A GPGGGVT W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.8e-1555.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++S       + E   V +        EDDV WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG

Query:  GV
        GV
Subjt:  GV

TrEMBL top hitse value%identityAlignment
A0A5A7VMG9 Reverse transcriptase1.8e-1555.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++S       + E   V +        EDDV WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG

Query:  GV
        GV
Subjt:  GV

A0A5D3C0X3 Retrotrans_gag domain-containing protein3.2e-1245.05Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSI-------------CLSSSTFQEGQRVSLEEDDVRWLHAIFRAKL
        MTEILS +LY TVCT                  VEIELPVPDTLPTSAES   + +             C        G    +  DDV WLHA+FRAK+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSI-------------CLSSSTFQEGQRVSLEEDDVRWLHAIFRAKL

Query:  AGGPGGGVTVW
        AG P GGVT W
Subjt:  AGGPGGGVTVW

A0A5D3C4P7 Retrotrans_gag domain-containing protein1.9e-1250Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW
        MTEILS  LYGTVCTQ                 VEIELPVPDTLPTS   ++T            G    + ED+V WL A+FRAK  GGPGGGVT W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW

A0A5D3CU23 Retrotrans_gag domain-containing protein2.6e-1453.06Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW
        MTEILS RLYGTVCTQ                 VEIELPV DTLPTSAESS ++S               +  DDV WLH++FRAK A GPGGGVT W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVW

A0A5D3DX39 Reverse transcriptase1.8e-1555.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++S       + E   V +        EDDV WLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSL-------EEDDVRWLHAIFRAKLAGGPGG

Query:  GV
        GV
Subjt:  GV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCATATGTTTATCAAGTTCAACATTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTC
CGGGAGGGGGTGTGACAGTTTGGACCAAGTATCAATACTATTTGCTGAATGATACCAGATATGTGAGTCTGCACTGTGCTCTGAGATTGGCTCGCTTTAAGGCACAACGT
TATAAAGATGCTACTCATCAGAAAAATCTTGATTTTAAACTTAAGATTATTGGAGGAGACACATCATTTATTCTTGTGATTTTTGATGCTATTGAGGTGGGAAAGCCTGT
TGATGTGTCCTGGATGTCATGTTATGTTCACTCTTATCCAGGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCATATGTTTATCAAGTTCAACATTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTC
CGGGAGGGGGTGTGACAGTTTGGACCAAGTATCAATACTATTTGCTGAATGATACCAGATATGTGAGTCTGCACTGTGCTCTGAGATTGGCTCGCTTTAAGGCACAACGT
TATAAAGATGCTACTCATCAGAAAAATCTTGATTTTAAACTTAAGATTATTGGAGGAGACACATCATTTATTCTTGTGATTTTTGATGCTATTGAGGTGGGAAAGCCTGT
TGATGTGTCCTGGATGTCATGTTATGTTCACTCTTATCCAGGGGATTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSICLSSSTFQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTVWTKYQYYLLNDTRYVSLHCALRLARFKAQR
YKDATHQKNLDFKLKIIGGDTSFILVIFDAIEVGKPVDVSWMSCYVHSYPGD