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Spg030411 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030411
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold6:25892807..25897149
RNA-Seq ExpressionSpg030411
SyntenySpg030411
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052217.1 hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]4.5e-1448.28Show/hide
Query:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS
        S  PRGNRP+LQT EL KT SIDY+TEILS RLYG +CTQ                 VEIEL VPDTL  SA+S + K + VG V               
Subjt:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS

Query:  LEEDDVCWLHAISRTK
           DDVCWLH + R K
Subjt:  LEEDDVCWLHAISRTK

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]4.5e-1448.28Show/hide
Query:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS
        S  PRGNRP+LQT EL KT SIDY+TEILS RLYG +CTQ                 VEIEL VPDTL  SA+S + K + VG V               
Subjt:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS

Query:  LEEDDVCWLHAISRTK
           DDVCWLH + R K
Subjt:  LEEDDVCWLHAISRTK

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1242.54Show/hide
Query:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIK----------------LQYVGG
        ++ PR NR SLQT EL KT SIDYMTEILS RL G +CTQ                 VEIELPVPDTL  SA+ F+                  L Y   
Subjt:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIK----------------LQYVGG

Query:  VVHCVCSMVQQGQQVSLEEDDVCWLHAISRTKLA
         V     +  +G    +  DDVCWLHA+ R K A
Subjt:  VVHCVCSMVQQGQQVSLEEDDVCWLHAISRTKLA

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]3.9e-1048.18Show/hide
Query:  KSHFHSFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQ-
        KS      PRGNR SLQT EL  T SIDYMTEILS RLYG +CT                  VEIELPVPD L  SA+S      Y    V     +V  
Subjt:  KSHFHSFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQ-

Query:  -QGQQVSLEE
         +GQQ SLEE
Subjt:  -QGQQVSLEE

TYK27997.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.7e-1058.9Show/hide
Query:  PRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQ
        PR NRPSLQT EL KT SIDYMTEILS R YG +CTQ                 VEIELPVPDTL  S +SF+
Subjt:  PRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQ

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein2.2e-1448.28Show/hide
Query:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS
        S  PRGNRP+LQT EL KT SIDY+TEILS RLYG +CTQ                 VEIEL VPDTL  SA+S + K + VG V               
Subjt:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS

Query:  LEEDDVCWLHAISRTK
           DDVCWLH + R K
Subjt:  LEEDDVCWLHAISRTK

A0A5A7VI26 Putative DNA/RNA polymerases superfamily protein3.2e-1058.9Show/hide
Query:  PRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQ
        PR NRPSLQT EL KT SIDYMTEILS R YG +CTQ                 VEIELPVPDTL  S +SF+
Subjt:  PRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQ

A0A5D3BRJ2 Reverse transcriptase domain-containing protein2.2e-1448.28Show/hide
Query:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS
        S  PRGNRP+LQT EL KT SIDY+TEILS RLYG +CTQ                 VEIEL VPDTL  SA+S + K + VG V               
Subjt:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQQGQQVS

Query:  LEEDDVCWLHAISRTK
           DDVCWLH + R K
Subjt:  LEEDDVCWLHAISRTK

A0A5D3CCC7 DNA/RNA polymerases superfamily protein5.3e-1342.54Show/hide
Query:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIK----------------LQYVGG
        ++ PR NR SLQT EL KT SIDYMTEILS RL G +CTQ                 VEIELPVPDTL  SA+ F+                  L Y   
Subjt:  SFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIK----------------LQYVGG

Query:  VVHCVCSMVQQGQQVSLEEDDVCWLHAISRTKLA
         V     +  +G    +  DDVCWLHA+ R K A
Subjt:  VVHCVCSMVQQGQQVSLEEDDVCWLHAISRTKLA

A0A5D3DE96 Uncharacterized protein1.9e-1048.18Show/hide
Query:  KSHFHSFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQ-
        KS      PRGNR SLQT EL  T SIDYMTEILS RLYG +CT                  VEIELPVPD L  SA+S      Y    V     +V  
Subjt:  KSHFHSFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQ-----------------VEIELPVPDTLSKSAKSFQIKLQYVGGVVHCVCSMVQ-

Query:  -QGQQVSLEE
         +GQQ SLEE
Subjt:  -QGQQVSLEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAAAGAAGCACGAATCTGGATTTTCTGTATTTGGGGGATTTCTGGACAAATCCGTCGGAAATCTCA
TTTTCATTCCTTCAGACCAAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTACTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATG
GTATCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAAAGTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGT
GTCTGTTCAATGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGTTGATGGTGATAATTTCCG
AAGCATTGAGACGCTTAAAGGTAGCATCTCAATGCTTCCTTCTCTAGACAAGTGGTTGTGCTGTGGCATTGTTGAGACGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGAAGTAGGTTTAATTTCAGGAGAAAAGTAGAGGGTAGCAAAGAAGCACGAATCTGGATTTTCTGTATTTGGGGGATTTCTGGACAAATCCGTCGGAAATCTCA
TTTTCATTCCTTCAGACCAAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTACTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATG
GTATCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGTCAAAGTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGT
GTCTGTTCAATGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGTTGATGGTGATAATTTCCG
AAGCATTGAGACGCTTAAAGGTAGCATCTCAATGCTTCCTTCTCTAGACAAGTGGTTGTGCTGTGGCATTGTTGAGACGTTGTGA
Protein sequenceShow/hide protein sequence
MTRSRFNFRRKVEGSKEARIWIFCIWGISGQIRRKSHFHSFRPRGNRPSLQTRELAKTTSIDYMTEILSPRLYGIMCTQVEIELPVPDTLSKSAKSFQIKLQYVGGVVHC
VCSMVQQGQQVSLEEDDVCWLHAISRTKLAVDGDNFRSIETLKGSISMLPSLDKWLCCGIVETL