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Spg030412 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030412
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold6:25456331..25458698
RNA-Seq ExpressionSpg030412
SyntenySpg030412
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]8.0e-2158.18Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSTTSFSTWVELYIESVYIVNV------------LFNV
        MQSQPLQNLGA ++    LF LSY EG KRPRGNR SLQT +L KTVEIELP+PDTLPT AES  ++ STW+ELY ESV++  +            L  V
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSTTSFSTWVELYIESVYIVNV------------LFNV

Query:  QEGQRVSLEE
         +GQ+ SLEE
Subjt:  QEGQRVSLEE

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.2e-2852.67Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--
        MQSQPLQNLGA ++    LFGL Y EG KRPRGNR+SLQT EL KT                 VEIELPVPDTLPTSAESS ++ STW+EL  E V++  
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--

Query:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
                   ++++FNV  G    +  D+V WLHA+F AK AGGPGGGV
Subjt:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

KAA0054351.1 reverse transcriptase [Cucumis melo var. makuwa]8.6e-2347.44Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--
        MQSQPLQNLGA +              N  PRGNR SLQT EL KT                 VEI+L VPDTL TSAESS ++ STW+ELY ESV++  
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--

Query:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQS
                   ++++FNV       +  D+V WLHA+FRA+ AGG GGGVTTWYQS
Subjt:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQS

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]4.1e-2541.58Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNK-----------------------------------------------RPRGNRSSLQTRELAKT-------
        MQSQPLQNLGA ++    LF LSY EG K                                                PRGNR SLQTREL KT       
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNK-----------------------------------------------RPRGNRSSLQTRELAKT-------

Query:  --------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQ
                V IELPVPD LPTSAESS ++ STW+ELY ESV++             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVTTW  
Subjt:  --------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQ

Query:  SS
        S+
Subjt:  SS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]7.5e-2744.92Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKR--------------------------------PRGNRSSLQTRELAKTV---------------EIELPV
        MQSQPLQNLGA ++    LF LSY EG K                                 PRGNR SLQT EL KTV                IELPV
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKR--------------------------------PRGNRSSLQTRELAKTV---------------EIELPV

Query:  PDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
        PDTLPTSAESS ++ STW+ELY ESV++             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  PDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein3.9e-2158.18Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSTTSFSTWVELYIESVYIVNV------------LFNV
        MQSQPLQNLGA ++    LF LSY EG KRPRGNR SLQT +L KTVEIELP+PDTLPT AES  ++ STW+ELY ESV++  +            L  V
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSTTSFSTWVELYIESVYIVNV------------LFNV

Query:  QEGQRVSLEE
         +GQ+ SLEE
Subjt:  QEGQRVSLEE

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.5e-2852.67Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--
        MQSQPLQNLGA ++    LFGL Y EG KRPRGNR+SLQT EL KT                 VEIELPVPDTLPTSAESS ++ STW+EL  E V++  
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--

Query:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
                   ++++FNV  G    +  D+V WLHA+F AK AGGPGGGV
Subjt:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein2.0e-2541.58Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNK-----------------------------------------------RPRGNRSSLQTRELAKT-------
        MQSQPLQNLGA ++    LF LSY EG K                                                PRGNR SLQTREL KT       
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNK-----------------------------------------------RPRGNRSSLQTRELAKT-------

Query:  --------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQ
                V IELPVPD LPTSAESS ++ STW+ELY ESV++             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVTTW  
Subjt:  --------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQ

Query:  SS
        S+
Subjt:  SS

A0A5D3CJX3 CCHC-type domain-containing protein3.6e-2744.92Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKR--------------------------------PRGNRSSLQTRELAKTV---------------EIELPV
        MQSQPLQNLGA ++    LF LSY EG K                                 PRGNR SLQT EL KTV                IELPV
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKR--------------------------------PRGNRSSLQTRELAKTV---------------EIELPV

Query:  PDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
        PDTLPTSAESS ++ STW+ELY ESV++             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  PDTLPTSAESSTTSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

A0A5D3CMM1 Reverse transcriptase4.1e-2347.44Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--
        MQSQPLQNLGA +              N  PRGNR SLQT EL KT                 VEI+L VPDTL TSAESS ++ STW+ELY ESV++  
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSTTSFSTWVELYIESVYI--

Query:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQS
                   ++++FNV       +  D+V WLHA+FRA+ AGG GGGVTTWYQS
Subjt:  -----------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGCCAAGAGGAAATAGGTCGAG
TCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCACAACAAGCTTCAGTACGTGGGTGGAGT
TGTATATTGAGTCTGTTTATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCATGCCATCTTTCGGGCT
AAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGCCAAGAGGAAATAGGTCGAG
TCTACAGACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCACAACAAGCTTCAGTACGTGGGTGGAGT
TGTATATTGAGTCTGTTTATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCATGCCATCTTTCGGGCT
AAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MQSQPLQNLGAKLSTSGFLFGLSYTEGNKRPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSTTSFSTWVELYIESVYIVNVLFNVQEGQRVSLEEDDVRWLHAIFRA
KLAGGPGGGVTTWYQSS