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Spg030464 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030464
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:30824569..30827116
RNA-Seq ExpressionSpg030464
SyntenySpg030464
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]2.1e-0979.55Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        MSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK AGGPGG
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.8e-0972.92Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT
        MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]6.2e-0972.92Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT
        MS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]2.8e-0975Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGP-GGVMP
        MSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK  GGP GGVMP
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGP-GGVMP

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.3e-0962.9Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT-EVLIHRGTFSSRS
        MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T E    RG   + S
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT-EVLIHRGTFSSRS

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein1.4e-0972.92Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT
        MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT

A0A5A7V9N3 Reverse transcriptase3.0e-0972.92Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT
        MS LH V    FSV +GSTGIVRGDDVCWLHAVFRAK  GGPGG + T
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.4e-0975Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGP-GGVMP
        MSGLH V    F++S+ STGIVRGDDVCWLHAVFRAK  GGP GGVMP
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGP-GGVMP

A0A5D3CJX3 CCHC-type domain-containing protein6.1e-1062.9Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT-EVLIHRGTFSSRS
        MS LH V    F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG + T E    RG   + S
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPT-EVLIHRGTFSSRS

A0A5D3DIE3 Retrotrans_gag domain-containing protein1.0e-0979.55Show/hide
Query:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG
        MSGLH V    F+VS+GST IVRGDDVCWLHAVFRAK AGGPGG
Subjt:  MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGGTGGTCCGGGAGGGGTGATGCCAACTGAGGTTTTGATTCATAGAGGAACATTCTCATCAAGATCATCTCTTTGGGAATTCATTGCTTTAGCAAATGTTCTGT
TTTTCAAGGACACCTCTACCTTCCAACCATCCATTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAA
GCTAGCAGGTGGTCCGGGAGGGGTGATGCCAACTGAGGTTTTGATTCATAGAGGAACATTCTCATCAAGATCATCTCTTTGGGAATTCATTGCTTTAGCAAATGTTCTGT
TTTTCAAGGACACCTCTACCTTCCAACCATCCATTTCTTAA
Protein sequenceShow/hide protein sequence
MSGLHHVYVERFSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVMPTEVLIHRGTFSSRSSLWEFIALANVLFFKDTSTFQPSIS