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Spg030475 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030475
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:32941572..32942696
RNA-Seq ExpressionSpg030475
SyntenySpg030475
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]4.5e-0845Show/hide
Query:  MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKS----FPIKLQYMGGVVHCVI---SQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSG
        MTEILS RLYGTVCTQV +ELP+PD LP SA+S    F   L+     VH  I      ++  G  L   V       +  DDV WLHA+ R K A   G
Subjt:  MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKS----FPIKLQYMGGVVHCVI---SQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-0740.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA
        MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++   V  V  +     G              + EDDV WLHA
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA

Query:  ISRTKLAGSSGGG
        + R K AG  GGG
Subjt:  ISRTKLAGSSGGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]4.6e-0535.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAI
        MTEILS RL+GTVCTQ                 V +ELPVPD LP S +S      Y            ++  G  L   +       +  DDV WLHA+
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAI

Query:  SRTKLAGSSGGG
         R K  G   GG
Subjt:  SRTKLAGSSGGG

TYK05030.1 uncharacterized protein E5676_scaffold143G002850 [Cucumis melo var. makuwa]1.2e-0539.13Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSF---PIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWL
        MTEILS +LY TVCT                  V +ELPVPD LP SA+SF   P++         C++S   L   C +   V       +  DDV WL
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSF---PIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWL

Query:  HAISRTKLAGSSGGG
        HA+ R K+AGS  GG
Subjt:  HAISRTKLAGSSGGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]8.4e-0740.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA
        MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++   V  V  +     G              + EDDV WLHA
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA

Query:  ISRTKLAGSSGGG
        + R K AG  GGG
Subjt:  ISRTKLAGSSGGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein2.2e-0845Show/hide
Query:  MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKS----FPIKLQYMGGVVHCVI---SQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSG
        MTEILS RLYGTVCTQV +ELP+PD LP SA+S    F   L+     VH  I      ++  G  L   V       +  DDV WLHA+ R K A   G
Subjt:  MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKS----FPIKLQYMGGVVHCVI---SQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSG

A0A5A7VMG9 Reverse transcriptase4.1e-0740.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA
        MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++   V  V  +     G              + EDDV WLHA
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA

Query:  ISRTKLAGSSGGG
        + R K AG  GGG
Subjt:  ISRTKLAGSSGGG

A0A5D3C0X3 Retrotrans_gag domain-containing protein5.9e-0639.13Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSF---PIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWL
        MTEILS +LY TVCT                  V +ELPVPD LP SA+SF   P++         C++S   L   C +   V       +  DDV WL
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSF---PIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWL

Query:  HAISRTKLAGSSGGG
        HA+ R K+AGS  GG
Subjt:  HAISRTKLAGSSGGG

A0A5D3DIE3 Retrotrans_gag domain-containing protein3.8e-0537.84Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAI
        MTEILS RLYGTVCTQ                 V +ELPV D L   A+SF     Y            ++  G  L   V       +  DDV WLHA+
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAI

Query:  SRTKLAGSSGG
         R K AG  GG
Subjt:  SRTKLAGSSGG

A0A5D3DX39 Reverse transcriptase4.1e-0740.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA
        MTEILSPRLYGTVCTQ                 V +ELPVPD LP SA+S       ++   V  V  +     G              + EDDV WLHA
Subjt:  MTEILSPRLYGTVCTQ-----------------VAVELPVPDKLPKSAKSFPIKLQ-YMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHA

Query:  ISRTKLAGSSGGG
        + R K AG  GGG
Subjt:  ISRTKLAGSSGGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGCGGTCGAGCTTCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAA
GCTTCAGTACATGGGTGGAGTTGTACATTGTGTTATTTCCCAAACTGAGTTATGTCAGGGCTGCACTTTATGTTCAACGGTTCAGCAGAGTCAACAGGTATCGTTAGAGG
AGGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCAGGAGGGGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGCGGTCGAGCTTCCGGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCCGATCAA
GCTTCAGTACATGGGTGGAGTTGTACATTGTGTTATTTCCCAAACTGAGTTATGTCAGGGCTGCACTTTATGTTCAACGGTTCAGCAGAGTCAACAGGTATCGTTAGAGG
AGGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCAGGAGGGGGGTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVAVELPVPDKLPKSAKSFPIKLQYMGGVVHCVISQTELCQGCTLCSTVQQSQQVSLEEDDVRWLHAISRTKLAGSSGGG