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Spg030476 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030476
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L11
Genome locationscaffold6:30056542..30058468
RNA-Seq ExpressionSpg030476
SyntenySpg030476
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR002132 - Ribosomal protein L5
IPR022803 - Ribosomal protein L5 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8115112.1 hypothetical protein N665_0030s0147 [Sinapis alba]1.8e-1067.21Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEFG
        MAS KK SNPMRDIKV KL+LNISV ES +RLTRA+KVLE+L  Q+PV S+G    V  FG
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEFG

KAG5545085.1 hypothetical protein RHGRI_017522 [Rhododendron griersonianum]3.1e-1067.21Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEFG
        MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G    V  FG
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEFG

KAG6594538.1 60S ribosomal protein L11-2, partial [Cucurbita argyrosperma subsp. sororia]3.1e-1067.8Show/hide
Query:  AVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        A+ + +  MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  QSPV S+
Subjt:  AVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

KFK30843.1 hypothetical protein AALP_AA6G032600 [Arabis alpina]3.1e-1063.89Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVE-FGRLVSSLKLDE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G     VE   RL+S   L E
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVE-FGRLVSSLKLDE

PON41134.1 Ribosomal protein [Parasponia andersonii]3.1e-1060.61Show/hide
Query:  YTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        Y  +++ +   + TPMAS+KK SNPMR+IKV KLVLNISV ES +RLTRA KVLE+L  Q+PV S+
Subjt:  YTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

TrEMBL top hitse value%identityAlignment
A0A087GLU1 Ribosomal_L5 domain-containing protein1.5e-1063.89Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVE-FGRLVSSLKLDE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G     VE   RL+S   L E
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVE-FGRLVSSLKLDE

A0A0D3CUN5 Uncharacterized protein2.0e-1068.97Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVV
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G   E +
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVV

A0A2P5AX49 Ribosomal protein1.5e-1060.61Show/hide
Query:  YTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        Y  +++ +   + TPMAS+KK SNPMR+IKV KLVLNISV ES +RLTRA KVLE+L  Q+PV S+
Subjt:  YTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

A0A3P5Z4G3 Uncharacterized protein3.4e-1075Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEG
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEG

D7LW67 60S ribosomal protein L113.4e-1075Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEG
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+G
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEG

SwissProt top hitse value%identityAlignment
A2YDY2 60S ribosomal protein L111.7e-1174.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA+KVLE+L  QSPV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

P42794 60S ribosomal protein L11-25.9e-1274.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

P42795 60S ribosomal protein L11-15.9e-1274.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

P46287 60S ribosomal protein L112.2e-1172.55Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA KVLE+L  Q+PV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

Q0DK10 60S ribosomal protein L111.7e-1174.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMR+IKV KLVLNISV ES +RLTRA+KVLE+L  QSPV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

Arabidopsis top hitse value%identityAlignment
AT2G42740.1 ribosomal protein large subunit 16A4.2e-1374.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

AT3G58700.1 Ribosomal L5P family protein4.2e-1374.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

AT4G18730.1 ribosomal protein L16B4.2e-1374.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

AT5G45775.1 Ribosomal L5P family protein2.4e-0873.17Show/hide
Query:  MRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Subjt:  MRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE

AT5G45775.2 Ribosomal L5P family protein4.2e-1374.51Show/hide
Query:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE
        MAS+KK SNPMRDIKV KLVLNISV ES +RLTRA+KVLE+L  Q+PV S+
Subjt:  MASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GATTTCTTCGCCCTCCCTCGGATTGAGCAGTACACACTAGTCGTCGTCATCGCAGTCGCCTACCAGAACACTCCAATGGCTTCGAAGAAGAAGTTTTCGAACCCCATGAG
GGATATTAAGGTGCATAAACTCGTTCTCAATATCTCAGTCGTTGAGAGCGCAAATCGACTTACCAGAGCTACTAAGGTGCTTGAGAAACTGATCAGCCAGAGCCCTGTGG
TCTCTGAAGGCTATGAGAGAGAGGTTGTTGAATTCGGCAGATTAGTTAGTTCATTAAAACTTGATGAACCTGAAGATGTAATTGTATCTGCTTGTCAATAA
mRNA sequenceShow/hide mRNA sequence
GATTTCTTCGCCCTCCCTCGGATTGAGCAGTACACACTAGTCGTCGTCATCGCAGTCGCCTACCAGAACACTCCAATGGCTTCGAAGAAGAAGTTTTCGAACCCCATGAG
GGATATTAAGGTGCATAAACTCGTTCTCAATATCTCAGTCGTTGAGAGCGCAAATCGACTTACCAGAGCTACTAAGGTGCTTGAGAAACTGATCAGCCAGAGCCCTGTGG
TCTCTGAAGGCTATGAGAGAGAGGTTGTTGAATTCGGCAGATTAGTTAGTTCATTAAAACTTGATGAACCTGAAGATGTAATTGTATCTGCTTGTCAATAA
Protein sequenceShow/hide protein sequence
DFFALPRIEQYTLVVVIAVAYQNTPMASKKKFSNPMRDIKVHKLVLNISVVESANRLTRATKVLEKLISQSPVVSEGYEREVVEFGRLVSSLKLDEPEDVIVSACQ