; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030479 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030479
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold6:31998854..32001018
RNA-Seq ExpressionSpg030479
SyntenySpg030479
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043405.1 hypothetical protein E6C27_scaffold1639G00040 [Cucumis melo var. makuwa]3.1e-3847.17Show/hide
Query:  AKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTD
        ++ GE STS  K  ++ DEK S+  ILRYVPLSRR+KGESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D
Subjt:  AKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTD

Query:  TNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKK
        +NHITV EVD  +EKE   Q+ S F  IRP V R  VF+RLSV + E +  Q+ +S  + S  +RL M   +E+ T   L  TRPSAF+RLSV  ++D  
Subjt:  TNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKK

Query:  EQSALSISHRLR
        +   + I +R+R
Subjt:  EQSALSISHRLR

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]2.9e-3647.47Show/hide
Query:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDD
        E STS  K  ++ +E  S+ PILRYVPLSR KKGESPF E  + +K    ++LKE +++     T+KGLGYKSPEP+RI R+GK KV D+NHITV+EVD 
Subjt:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDD

Query:  SKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSALSISH
         + KE   Q+TS F  I P VAR  VF+RLS+ EA+ +  Q+ ++  R S F+RL +   EE+        T+PSAF+RLS+T +++ +   A  I+H
Subjt:  SKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSALSISH

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]6.9e-3843.48Show/hide
Query:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------------KKLLKEGYSLP
        E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K                                           KKLL+EG+ +P
Subjt:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------------KKLLKEGYSLP

Query:  STRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEE
         +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ EA+ +  Q+ ++  R S F+RL +   EE+
Subjt:  STRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEE

Query:  STFPTLDVTRPSAFQRLSVTTRRDKKEQSA
            T   T+PSAF+RLS+T +++ +   A
Subjt:  STFPTLDVTRPSAFQRLSVTTRRDKKEQSA

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-3631Show/hide
Query:  DENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFCPPQPITLAEYFPRRFLDDSQREALETVT------------
        +++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKKTR+ K V E+ +DF    + +TLA++FP RFL D Q E    V             
Subjt:  DENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFCPPQPITLAEYFPRRFLDDSQREALETVT------------

Query:  -----CHIVDVVEDD--------DVPASSSGTV---------ADPG---------------------------------------DLSYF----------
             C  +D  ++D        + P   SG V          D G                                       D  ++          
Subjt:  -----CHIVDVVEDD--------DVPASSSGTV---------ADPG---------------------------------------DLSYF----------

Query:  -------------SIKGLLSLPQEAKSG-------EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------
                      +K L S      +G       E STS  K  +V DEK S+ PILRYVPLSRRKKGESPF E  + +K                   
Subjt:  -------------SIKGLLSLPQEAKSG-------EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------

Query:  ----------------------------------------------------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHIT
                                                                  KKLL+EG+++P +RKGLGYK PEP+RI R+GK KV D+NHIT
Subjt:  ----------------------------------------------------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHIT

Query:  VEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEEST
        V+EVD  +EKE   Q+TS F  + P VAR  VF+RLS+ EAE +  Q+ +S  R S F+RL M    E+ +
Subjt:  VEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEEST

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]7.6e-3741.67Show/hide
Query:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-----------------------------------------------------K
        E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K                                                     K
Subjt:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-----------------------------------------------------K

Query:  KLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFR
        KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ EAE +  Q+ ++  + S F+
Subjt:  KLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFR

Query:  RLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA
        RL +   EE+    T   T+PSAF+RLS+T +++ +   A
Subjt:  RLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA

TrEMBL top hitse value%identityAlignment
A0A5A7TPR5 RNase H domain-containing protein1.5e-3847.17Show/hide
Query:  AKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTD
        ++ GE STS  K  ++ DEK S+  ILRYVPLSRR+KGESPF +  + +K             KKLL+EG+ +P +RKG GYKSPEP+ IIR+ K KV D
Subjt:  AKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTD

Query:  TNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKK
        +NHITV EVD  +EKE   Q+ S F  IRP V R  VF+RLSV + E +  Q+ +S  + S  +RL M   +E+ T   L  TRPSAF+RLSV  ++D  
Subjt:  TNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKK

Query:  EQSALSISHRLR
        +   + I +R+R
Subjt:  EQSALSISHRLR

A0A5A7UMY2 Reverse transcriptase domain-containing protein3.3e-3843.48Show/hide
Query:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------------KKLLKEGYSLP
        E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K                                           KKLL+EG+ +P
Subjt:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------------------------------KKLLKEGYSLP

Query:  STRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEE
         +RKGLGYKSPEP+RI R+GK KV D NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ EA+ +  Q+ ++  R S F+RL +   EE+
Subjt:  STRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEE

Query:  STFPTLDVTRPSAFQRLSVTTRRDKKEQSA
            T   T+PSAF+RLS+T +++ +   A
Subjt:  STFPTLDVTRPSAFQRLSVTTRRDKKEQSA

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.4e-3631Show/hide
Query:  DENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFCPPQPITLAEYFPRRFLDDSQREALETVT------------
        +++EGWT+V RRKK+K +  +KESRL+ + +R  K+Q+ K KKKTR+ K V E+ +DF    + +TLA++FP RFL D Q E    V             
Subjt:  DENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFCPPQPITLAEYFPRRFLDDSQREALETVT------------

Query:  -----CHIVDVVEDD--------DVPASSSGTV---------ADPG---------------------------------------DLSYF----------
             C  +D  ++D        + P   SG V          D G                                       D  ++          
Subjt:  -----CHIVDVVEDD--------DVPASSSGTV---------ADPG---------------------------------------DLSYF----------

Query:  -------------SIKGLLSLPQEAKSG-------EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------
                      +K L S      +G       E STS  K  +V DEK S+ PILRYVPLSRRKKGESPF E  + +K                   
Subjt:  -------------SIKGLLSLPQEAKSG-------EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-------------------

Query:  ----------------------------------------------------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHIT
                                                                  KKLL+EG+++P +RKGLGYK PEP+RI R+GK KV D+NHIT
Subjt:  ----------------------------------------------------------KKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHIT

Query:  VEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEEST
        V+EVD  +EKE   Q+TS F  + P VAR  VF+RLS+ EAE +  Q+ +S  R S F+RL M    E+ +
Subjt:  VEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEEST

A0A5D3C8N8 Ribonuclease H1.4e-3647.47Show/hide
Query:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDD
        E STS  K  ++ +E  S+ PILRYVPLSR KKGESPF E  + +K    ++LKE +++     T+KGLGYKSPEP+RI R+GK KV D+NHITV+EVD 
Subjt:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKK---KLLKEGYSL---PSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDD

Query:  SKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSALSISH
         + KE   Q+TS F  I P VAR  VF+RLS+ EA+ +  Q+ ++  R S F+RL +   EE+        T+PSAF+RLS+T +++ +   A  I+H
Subjt:  SKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSALSISH

A0A5D3DXC7 Reverse transcriptase domain-containing protein3.7e-3741.67Show/hide
Query:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-----------------------------------------------------K
        E ST+  K  ++ DEK S+ PILRYVPLSRRKKGESPF E  + +K                                                     K
Subjt:  EVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIK-----------------------------------------------------K

Query:  KLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFR
        KLL+EG+ +P +RKGLGYKSPEP+RI R+GK KV D+NHITV+EVD  +EKE  +Q+TS F  I P VAR  VF+RLS+ EAE +  Q+ ++  + S F+
Subjt:  KLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTNHITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFR

Query:  RLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA
        RL +   EE+    T   T+PSAF+RLS+T +++ +   A
Subjt:  RLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGAGACGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGT
TAAATCTCAAAGGAAGAAGGGAAAAAAGAAGACAAGGAGGTCAAAGCCCGTCGTGGAGGAAACTGAAGATTTCTTTTGCCCTCCACAACCTATAACTTTGGCAGAATACT
TCCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGACGATGTTCCTGCTAGTTCCTCGGGAACG
GTGGCAGATCCAGGAGACTTATCCTACTTCAGCATAAAGGGCTTATTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGTGTCTACAAGCCTTGTGAAACCTAAGGTTGT
AAAGGATGAAAAATGTTCAAGTTCACCTATCCTACGATACGTCCCTTTATCTCGACGTAAAAAAGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAGC
TTCTAAAGGAAGGTTATAGTCTGCCTTCAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGACGGACACAAAT
CATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACAAACTTCTGTTTTTAGGGGCATCAGGCCACCAGTTGCTCGTGTTTTAGTCTTTCA
GAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCGCACAAACTAACAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAATATGCCCATTGGGGAAGAAGAGAGTA
CATTTCCAACTCTGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTTGTCGATTTCTCACCGACTTCGA
TACGAAGATGCGATGAGAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGAGACGAGAATGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGT
TAAATCTCAAAGGAAGAAGGGAAAAAAGAAGACAAGGAGGTCAAAGCCCGTCGTGGAGGAAACTGAAGATTTCTTTTGCCCTCCACAACCTATAACTTTGGCAGAATACT
TCCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGGCACTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGACGATGTTCCTGCTAGTTCCTCGGGAACG
GTGGCAGATCCAGGAGACTTATCCTACTTCAGCATAAAGGGCTTATTGTCACTTCCTCAGGAAGCTAAAAGCGGTGAAGTGTCTACAAGCCTTGTGAAACCTAAGGTTGT
AAAGGATGAAAAATGTTCAAGTTCACCTATCCTACGATACGTCCCTTTATCTCGACGTAAAAAAGGTGAATCACCTTTCACTGAATGTTCAGAAAGCATAAAGAAGAAGC
TTCTAAAGGAAGGTTATAGTCTGCCTTCAACGAGAAAAGGACTTGGATATAAGTCGCCTGAGCCAGTTCGCATAATAAGAAGAGGGAAGGCGAAAGTGACGGACACAAAT
CATATAACAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGTGTCGACCAACAAACTTCTGTTTTTAGGGGCATCAGGCCACCAGTTGCTCGTGTTTTAGTCTTTCA
GAGATTAAGTGTCAATGAAGCGGAAGAAGAAAGCGCACAAACTAACAATAGCTCCACTCGACCTTCAGTTTTTCGAAGGTTAAATATGCCCATTGGGGAAGAAGAGAGTA
CATTTCCAACTCTGGATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAGTGTTACCACGAGAAGAGACAAAAAAGAACAGTCTGCTTTGTCGATTTCTCACCGACTTCGA
TACGAAGATGCGATGAGAAATGAAAAGATCACGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTAA
Protein sequenceShow/hide protein sequence
MKRDENEGWTLVVRRKKQKQSYARKESRLFRDSKRKVKSQRKKGKKKTRRSKPVVEETEDFFCPPQPITLAEYFPRRFLDDSQREALETVTCHIVDVVEDDDVPASSSGT
VADPGDLSYFSIKGLLSLPQEAKSGEVSTSLVKPKVVKDEKCSSSPILRYVPLSRRKKGESPFTECSESIKKKLLKEGYSLPSTRKGLGYKSPEPVRIIRRGKAKVTDTN
HITVEEVDDSKEKESVDQQTSVFRGIRPPVARVLVFQRLSVNEAEEESAQTNNSSTRPSVFRRLNMPIGEEESTFPTLDVTRPSAFQRLSVTTRRDKKEQSALSISHRLR
YEDAMRNEKITKADGEIRSAVP