; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030489 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030489
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold6:33678414..33681054
RNA-Seq ExpressionSpg030489
SyntenySpg030489
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]5.8e-3160.14Show/hide
Query:  VNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVLSIVEC--TSRIRSSIWPRGNRPSLQTGELDKT-----------------VEIELPVPDTLPTSAE
        VNLW F           ST FS KPGG LVFSD LSI+E   +++    + PRGNRPSLQTG+LDKT                 VEIELPVPDTLPTSAE
Subjt:  VNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVLSIVEC--TSRIRSSIWPRGNRPSLQTGELDKT-----------------VEIELPVPDTLPTSAE

Query:  SSGSSFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT---AKG
        S  S+ RSTGIVRGDDVCWL  VFRAK AGGPGGGVT   AKG
Subjt:  SSGSSFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT---AKG

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-2652.44Show/hide
Query:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIR---------SSIWPRGNRPSLQTGELDKT-----------------VEIELPVP
        VNLW F  FGL ++   +STGFS KPG  LVFSD LSI++     +          S  PRGN+PSLQTGELDKT                 VEIEL VP
Subjt:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIR---------SSIWPRGNRPSLQTGELDKT-----------------VEIELPVP

Query:  DTLPTSAESSGS-------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT
        DTLPTSAES GS                   S  STGIVRGDDVC L VVFRAK AGGPGGGVT
Subjt:  DTLPTSAESSGS-------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]5.6e-3438.41Show/hide
Query:  KETHHRQPLYSAHFHSIPHPFPLKLSEHFKKRVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQPVNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVL
        K  H +  L+  +F S  H FP KLSEHF++RVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                    STGFS KP G LVFSD L
Subjt:  KETHHRQPLYSAHFHSIPHPFPLKLSEHFKKRVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQPVNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVL

Query:  SIVECTSRIRSSIW-------------PRGNRPSLQTGELDK----------------------------------------------------------
        SI+E     +   W             PRGNR SLQTG+LDK                                                          
Subjt:  SIVECTSRIRSSIW-------------PRGNRPSLQTGELDK----------------------------------------------------------

Query:  ---------------------TVEIELPVPDTLPTSAESSGSS---------------------------FRSTGIVRGDDVCWLQVVFRAKLAGGPGGG
                             ++EIEL VPDTLPTSAESSGS+                            RS GIVR +DVCWL  VFRAK+AGG GGG
Subjt:  ---------------------TVEIELPVPDTLPTSAESSGSS---------------------------FRSTGIVRGDDVCWLQVVFRAKLAGGPGGG

Query:  VT
        VT
Subjt:  VT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.6e-2649.71Show/hide
Query:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAES
        VNLW F  F L +    +STGFS KPGG LV SD LSI+E   ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAES
Subjt:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAES

Query:  SGS-----------------------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT
        SGS                                   S  STGIVRGDDVCWL  VFRAK  GGPGGGVT
Subjt:  SGS-----------------------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-2549.09Show/hide
Query:  RRNQE----STGFSGKPGGSLVFSDVLSIVE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGS
        RRN+     STGFS KPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK                  VEIELP+PDTLPTSAESSGS
Subjt:  RRNQE----STGFSGKPGGSLVFSDVLSIVE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGS

Query:  SFR--------------------------------STGIVRGDDVCWLQVVFRAKLAGGPGGGVT
        +                                  S GIVRGDDVCWL  +FRAK AGGPGGGVT
Subjt:  SFR--------------------------------STGIVRGDDVCWLQVVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein7.9e-2649.09Show/hide
Query:  RRNQE----STGFSGKPGGSLVFSDVLSIVE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGS
        RRN+     STGFS KPGG LVFSD LSI E      ++   I   WPRGNRP LQTGELDK                  VEIELP+PDTLPTSAESSGS
Subjt:  RRNQE----STGFSGKPGGSLVFSDVLSIVE---CTSRIRSSI---WPRGNRPSLQTGELDK-----------------TVEIELPVPDTLPTSAESSGS

Query:  SFR--------------------------------STGIVRGDDVCWLQVVFRAKLAGGPGGGVT
        +                                  S GIVRGDDVCWL  +FRAK AGGPGGGVT
Subjt:  SFR--------------------------------STGIVRGDDVCWLQVVFRAKLAGGPGGGVT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein1.2e-2652.44Show/hide
Query:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIR---------SSIWPRGNRPSLQTGELDKT-----------------VEIELPVP
        VNLW F  FGL ++   +STGFS KPG  LVFSD LSI++     +          S  PRGN+PSLQTGELDKT                 VEIEL VP
Subjt:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIR---------SSIWPRGNRPSLQTGELDKT-----------------VEIELPVP

Query:  DTLPTSAESSGS-------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT
        DTLPTSAES GS                   S  STGIVRGDDVC L VVFRAK AGGPGGGVT
Subjt:  DTLPTSAESSGS-------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT

A0A5D3BAD1 Retrotrans_gag domain-containing protein2.8e-3160.14Show/hide
Query:  VNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVLSIVEC--TSRIRSSIWPRGNRPSLQTGELDKT-----------------VEIELPVPDTLPTSAE
        VNLW F           ST FS KPGG LVFSD LSI+E   +++    + PRGNRPSLQTG+LDKT                 VEIELPVPDTLPTSAE
Subjt:  VNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVLSIVEC--TSRIRSSIWPRGNRPSLQTGELDKT-----------------VEIELPVPDTLPTSAE

Query:  SSGSSFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT---AKG
        S  S+ RSTGIVRGDDVCWL  VFRAK AGGPGGGVT   AKG
Subjt:  SSGSSFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT---AKG

A0A5D3CAC6 Uncharacterized protein2.7e-3438.41Show/hide
Query:  KETHHRQPLYSAHFHSIPHPFPLKLSEHFKKRVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQPVNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVL
        K  H +  L+  +F S  H FP KLSEHF++RVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                    STGFS KP G LVFSD L
Subjt:  KETHHRQPLYSAHFHSIPHPFPLKLSEHFKKRVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQPVNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVL

Query:  SIVECTSRIRSSIW-------------PRGNRPSLQTGELDK----------------------------------------------------------
        SI+E     +   W             PRGNR SLQTG+LDK                                                          
Subjt:  SIVECTSRIRSSIW-------------PRGNRPSLQTGELDK----------------------------------------------------------

Query:  ---------------------TVEIELPVPDTLPTSAESSGSS---------------------------FRSTGIVRGDDVCWLQVVFRAKLAGGPGGG
                             ++EIEL VPDTLPTSAESSGS+                            RS GIVR +DVCWL  VFRAK+AGG GGG
Subjt:  ---------------------TVEIELPVPDTLPTSAESSGSS---------------------------FRSTGIVRGDDVCWLQVVFRAKLAGGPGGG

Query:  VT
        VT
Subjt:  VT

A0A5D3CJX3 CCHC-type domain-containing protein2.7e-2649.71Show/hide
Query:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAES
        VNLW F  F L +    +STGFS KPGG LV SD LSI+E   ++   ++  PRGNR SLQTGELDKTV                IELPVPDTLPTSAES
Subjt:  VNLWCFSRFGL-HRRNQESTGFSGKPGGSLVFSDVLSIVECTSRIRSSIW--PRGNRPSLQTGELDKTV---------------EIELPVPDTLPTSAES

Query:  SGS-----------------------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT
        SGS                                   S  STGIVRGDDVCWL  VFRAK  GGPGGGVT
Subjt:  SGS-----------------------------------SFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCAAGGAAACCCACCACCGACAACCACTCTATTCAGCCCATTTTCATTCCATTCCTCATCCTTTTCCATTAAAACTTTCAGAGCACTTTAAGAAGAGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGGGTTCAACCTGTCAACCTCTGGTGTT
TTAGTCGGTTTGGGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGGGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTGTGGAGTGCACAAGT
CGAATCCGAAGCTCTATCTGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCCGGATCAAGCTTCAGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAAGTCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGG
GTGTGACAGCCAAGGGGTGCCTTTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCAAGGAAACCCACCACCGACAACCACTCTATTCAGCCCATTTTCATTCCATTCCTCATCCTTTTCCATTAAAACTTTCAGAGCACTTTAAGAAGAGAGTGAA
GGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCTGGGTTCAACCTGTCAACCTCTGGTGTT
TTAGTCGGTTTGGGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGGGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGTATTGTGGAGTGCACAAGT
CGAATCCGAAGCTCTATCTGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTC
TGCTGAAAGTTCCGGATCAAGCTTCAGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCAAGTCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGG
GTGTGACAGCCAAGGGGTGCCTTTTATAG
Protein sequenceShow/hide protein sequence
MDSKETHHRQPLYSAHFHSIPHPFPLKLSEHFKKRVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQPVNLWCFSRFGLHRRNQESTGFSGKPGGSLVFSDVLSIVECTS
RIRSSIWPRGNRPSLQTGELDKTVEIELPVPDTLPTSAESSGSSFRSTGIVRGDDVCWLQVVFRAKLAGGPGGGVTAKGCLL