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Spg030505 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030505
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSuccinate-CoA ligase subunit beta
Genome locationscaffold6:33635853..33642290
RNA-Seq ExpressionSpg030505
SyntenySpg030505
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0006104 - succinyl-CoA metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0042709 - succinate-CoA ligase complex (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0004775 - succinate-CoA ligase (ADP-forming) activity (molecular function)
GO:0004776 - succinate-CoA ligase (GDP-forming) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR013650 - ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 - ATP-grasp fold, subdomain 1
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157524.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Momordica charantia]1.2e-3990.72Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QG+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_022157525.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X2 [Momordica charantia]1.2e-3990.72Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QG+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_022959857.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita moschata]4.8e-4192.78Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_023005021.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita maxima]4.8e-4192.78Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

XP_038876130.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Benincasa hispida]3.5e-3989.69Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELMNKYGINV KG+ VSSV+EAKNA+QT FPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

TrEMBL top hitse value%identityAlignment
A0A5D3DLZ9 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial4.9e-3989.69Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELM+KYGINV KG+ VSSVDE KNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1DTC6 Succinate-CoA ligase subunit beta5.7e-4090.72Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QG+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1DWQ4 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial5.7e-4090.72Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QG+ELM+KYGINV KGV VSSVDEAKNAV+TAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1H5Q5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial2.3e-4192.78Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

A0A6J1KTS5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial2.3e-4192.78Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELMNKYGINV KG+ VSSVDEAKNAVQTAFPDAKELV+KSQILAGG+GLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

SwissProt top hitse value%identityAlignment
B9DI20 Squamosa promoter-binding-like protein 13A1.5e-2456.7Show/hide
Query:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        D+D SNC++YH+RH+VCD HSKT VV + G ++RF QQC+ FH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG

O82662 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.8e-3576.29Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELM KYG+NV KGV  SS++E K A+Q  FP+  ELV+KSQILAGG+GLGTFKSGLK GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

P0DI11 Squamosa promoter-binding-like protein 13B1.5e-2456.7Show/hide
Query:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        D+D SNC++YH+RH+VCD HSKT VV + G ++RF QQC+ FH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG

Q6K9N6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial1.1e-3270.1Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELM KYGINV +G    SV+E KN ++  FP  KE+V+KSQILAGG+GLGTFKSGL+ GVHIVK ++ E  A KMLGQILVTKQTGPQGK+VSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

Q84LB6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial2.3e-3372.16Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELM+KYGINV KGV V+S+DE K A+Q  FP+  E+V+KSQ+LAGG+GLGTFK+G + GVHIVK DQ E+ A KMLGQILVTKQTG QGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

Arabidopsis top hitse value%identityAlignment
AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.6e-2156.18Show/hide
Query:  DLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKP-------QPESLFMSSRDFLSN
        DLS+ KDYH+RHRVC++HSKT VV+V G E+RF QQC+ FH L E D+ KRSCR+RL GHN RRRKP       +   L  +S+D + N
Subjt:  DLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKP-------QPESLFMSSRDFLSN

AT2G20420.1 ATP citrate lyase (ACL) family protein1.3e-3676.29Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK
        QGAELM KYG+NV KGV  SS++E K A+Q  FP+  ELV+KSQILAGG+GLGTFKSGLK GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSK
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSK

AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.0e-2556.7Show/hide
Query:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        D+D SNC++YH+RH+VCD HSKT VV + G ++RF QQC+ FH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG

AT5G50570.2 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.0e-2556.7Show/hide
Query:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        D+D SNC++YH+RH+VCD HSKT VV + G ++RF QQC+ FH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG

AT5G50670.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.0e-2556.7Show/hide
Query:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        D+D SNC++YH+RH+VCD HSKT VV + G ++RF QQC+ FH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  DTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACTTCTCTAAGTAGTTTGGATAAATTCTCACATATCATCTTTGGTACTCTTTTGCTCATTTTCTCCTCGTCGATTTCTTTTTTCAAAATACCATATTTTGACACTGACTT
GAGCAATTGCAAGGATTATCATCGGCGCCATAGGGTATGCGATTCACACTCAAAAACCCATGTTGTGATGGTGAGGGGTGAGGAGAAGCGATTCTTTCAACAGTGCAACA
TGTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCGGCGTAGGAGGAAGCCTCAACCTGAATCCTTGTTTATGAGT
TCAAGGGATTTTCTCTCAAATTGCAATGATCAGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATGAAGCAAAAAA
CGCAGTCCAGACTGCTTTTCCTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCTGGTGGAAAAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTC
ACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGGAGGATGAA
TTTGTTGAATTTGTTGAATTTGTTGGGTTGAATTTGTTGCATTCACTGAAGCTTTCTCATGGCAATATCTTGGCCATATGCAAAGCTGTCACCGTAACCATTTATGGCTT
GATACTACTTGCGCTTCTTGTAGAAAATTTGCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCAGGCAGAGACAAATTTCCACTACATGAGGT
GGACAAATGAAGAAAATATTGTTGGGTGTCGAGATCGCATCGACGTCGAAACGCTAGGGGTAGCGTCTGACGCCATCCCTAATCCGAGCCTTGCTGCCTTTTTTCTCGGT
TTTGTCTCGTAA
mRNA sequenceShow/hide mRNA sequence
ACTTCTCTAAGTAGTTTGGATAAATTCTCACATATCATCTTTGGTACTCTTTTGCTCATTTTCTCCTCGTCGATTTCTTTTTTCAAAATACCATATTTTGACACTGACTT
GAGCAATTGCAAGGATTATCATCGGCGCCATAGGGTATGCGATTCACACTCAAAAACCCATGTTGTGATGGTGAGGGGTGAGGAGAAGCGATTCTTTCAACAGTGCAACA
TGTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCGGCGTAGGAGGAAGCCTCAACCTGAATCCTTGTTTATGAGT
TCAAGGGATTTTCTCTCAAATTGCAATGATCAGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATGAAGCAAAAAA
CGCAGTCCAGACTGCTTTTCCTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCTGGTGGAAAAGGTTTGGGGACATTCAAAAGTGGCTTAAAGGCTGGAGTTC
ACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAAGGAGGATGAA
TTTGTTGAATTTGTTGAATTTGTTGGGTTGAATTTGTTGCATTCACTGAAGCTTTCTCATGGCAATATCTTGGCCATATGCAAAGCTGTCACCGTAACCATTTATGGCTT
GATACTACTTGCGCTTCTTGTAGAAAATTTGCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGTTCAGGCAGAGACAAATTTCCACTACATGAGGT
GGACAAATGAAGAAAATATTGTTGGGTGTCGAGATCGCATCGACGTCGAAACGCTAGGGGTAGCGTCTGACGCCATCCCTAATCCGAGCCTTGCTGCCTTTTTTCTCGGT
TTTGTCTCGTAA
Protein sequenceShow/hide protein sequence
TSLSSLDKFSHIIFGTLLLIFSSSISFFKIPYFDTDLSNCKDYHRRHRVCDSHSKTHVVMVRGEEKRFFQQCNMFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMS
SRDFLSNCNDQGAELMNKYGINVSKGVVVSSVDEAKNAVQTAFPDAKELVIKSQILAGGKGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKEDE
FVEFVEFVGLNLLHSLKLSHGNILAICKAVTVTIYGLILLALLVENLQAEKEFRVEVEAIGHVQAETNFHYMRWTNEENIVGCRDRIDVETLGVASDAIPNPSLAAFFLG
FVS