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Spg030512 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030512
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTryptophanyl-tRNA synthetase
Genome locationscaffold6:33650994..33654096
RNA-Seq ExpressionSpg030512
SyntenySpg030512
Gene Ontology termsGO:0006436 - tryptophanyl-tRNA aminoacylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0004830 - tryptophan-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR014729 - Rossmann-like alpha/beta/alpha sandwich fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4285523.1 unnamed protein product [Prunus armeniaca]5.4e-2164.13Show/hide
Query:  NEVLGLKHPDDKQCIFNDRVKGRLKVTRAFGARFLKQVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        NE+LG     +K  ++  R      +   F AR LK VPLVIQLTD+EKCMWKNL+VEESQRL REN KDIIACGFD+++TFIFSDFDYVGG
Subjt:  NEVLGLKHPDDKQCIFNDRVKGRLKVTRAFGARFLKQVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

KAB2065738.1 hypothetical protein ES319_A09G111000v1 [Gossypium barbadense]7.0e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

PPD91328.1 hypothetical protein GOBAR_DD11728 [Gossypium barbadense]7.0e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

XP_004246071.1 tryptophan--tRNA ligase, cytoplasmic [Solanum lycopersicum]7.0e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

XP_008452422.1 PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Cucumis melo]7.0e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

TrEMBL top hitse value%identityAlignment
A0A0B0NGP7 Tryptophanyl-tRNA synthetase3.4e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

A0A0D2SW54 Tryptophanyl-tRNA synthetase3.4e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

A0A2P5VSV0 Tryptophanyl-tRNA synthetase3.4e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

A0A6A3ARD2 Tryptophanyl-tRNA synthetase3.4e-2194.64Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EKCMWKNLSVEESQRLAREN KDIIACGFDISKTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

A0A6J5VBQ0 Uncharacterized protein2.6e-2164.13Show/hide
Query:  NEVLGLKHPDDKQCIFNDRVKGRLKVTRAFGARFLKQVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        NE+LG     +K  ++  R      +   F AR LK VPLVIQLTD+EKCMWKNL+VEESQRL REN KDIIACGFD+++TFIFSDFDYVGG
Subjt:  NEVLGLKHPDDKQCIFNDRVKGRLKVTRAFGARFLKQVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

SwissProt top hitse value%identityAlignment
P17248 Tryptophan--tRNA ligase, cytoplasmic2.3e-1466.67Show/hide
Query:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG
        VPLVIQ+TD+EK +WK+L+++++   A EN KDIIACGFDI+KTFIFSD DY+G
Subjt:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG

P23381 Tryptophan--tRNA ligase, cytoplasmic1.7e-1466.67Show/hide
Query:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG
        VPLVIQ+TD+EK +WK+L+++++   A EN KDIIACGFDI+KTFIFSD DY+G
Subjt:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG

P32921 Tryptophan--tRNA ligase, cytoplasmic1.9e-1362.96Show/hide
Query:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG
        VPLVIQ++D+EK +WK+L++E++     EN KDIIACGFDI+KTFIFSD +Y+G
Subjt:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG

Q5R4J1 Tryptophan--tRNA ligase, cytoplasmic1.7e-1466.67Show/hide
Query:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG
        VPLVIQ+TD+EK +WK+L+++++   A EN KDIIACGFDI+KTFIFSD DY+G
Subjt:  VPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVG

Q9SR15 Tryptophan--tRNA ligase, cytoplasmic1.1e-2187.5Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EK +WKNLSVEESQRLAREN KDIIACGFD++KTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

Arabidopsis top hitse value%identityAlignment
AT2G28890.1 poltergeist like 44.0e-0670.97Show/hide
Query:  KHPDDKQCIFNDRVKGRLKVTRAFGARFLKQ
        +HPDD   + N+RVKG LKVTRAFGA FLKQ
Subjt:  KHPDDKQCIFNDRVKGRLKVTRAFGARFLKQ

AT2G35350.1 poltergeist like 18.6e-0979.41Show/hide
Query:  KHPDDKQCIFNDRVKGRLKVTRAFGARFLKQVPL
        +HPDD  CI NDRVKGRLKVTRAFGA FLKQ  L
Subjt:  KHPDDKQCIFNDRVKGRLKVTRAFGARFLKQVPL

AT3G04600.1 Nucleotidylyl transferase superfamily protein8.0e-2387.5Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EK +WKNLSVEESQRLAREN KDIIACGFD++KTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

AT3G04600.2 Nucleotidylyl transferase superfamily protein8.0e-2387.5Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EK +WKNLSVEESQRLAREN KDIIACGFD++KTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG

AT3G04600.3 Nucleotidylyl transferase superfamily protein8.0e-2387.5Show/hide
Query:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG
        +VPLVIQLTD+EK +WKNLSVEESQRLAREN KDIIACGFD++KTFIFSDFDYVGG
Subjt:  QVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAACACTCCCACCGCCCTTTCTCTCGCCTCCGATCAAACTCCGGTGTCCACAGAGAGTGTCGGCAGCTGCACTCCTCCCTCCCATCTCCGACGTCGTCTAGAGAA
TCTTAGGTCGCTTTGCACCGGCGAGAAAGGAATTGCCCCCAAAATCGGCATTCCGCTCCATTTCAAGGCCCCTGTTACATGTTTACGAGATGGCGAAGAGCAAGGTGGGA
GTTGCATTTATGGGAGTAATGAGGCCAAAGTTAGTGAAGAAGTCGATTATTTTGGTGGTTATGGCTTGAATTCAGGCAATGACAACAGTTTGTCTCTCCAAATAGCAGCA
ACATCAACAATTTGCAATGGAGTTGCACTAAAAGTGTGGGGGATGTTGTTTCAGTTGGATTATGTGGTTCATTTCCTTGTGGAGTTATCAATTCTTCCTGAATTGCAAAC
TCCATATCAGTTGGCCTGTTATTTGTTATGTTGTTGTGATAGTTGGCAGTTGATTTCTTCATCTGATGCACCAATACTCTCATTTGATGGATGCTCCACTGCCACAAGTT
CACAATTTAATTGTCTCGTCTTTTGTACCTCAATTGCAGTAGCTGGTGTCTCCACATGTTCATTAACACCACTGGTTGATACTACAGCATTGGAGATTGGTAAAGCTCAA
CCTTCTATTTCCTTCTCCATATGTATATCAAACAATGAGGTACTAGGCCTGAAGCACCCAGATGACAAACAATGCATTTTCAATGATAGAGTGAAGGGTCGTCTAAAGGT
TACGAGGGCATTTGGTGCAAGATTTTTGAAACAGGTGCCCCTTGTGATACAACTCACTGACAATGAGAAGTGTATGTGGAAAAATCTCTCTGTGGAAGAGAGCCAGAGGC
TTGCTCGTGAGAATACGAAAGATATCATTGCTTGTGGTTTTGATATTTCAAAAACCTTTATCTTCTCTGATTTTGATTACGTTGGAGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAACACTCCCACCGCCCTTTCTCTCGCCTCCGATCAAACTCCGGTGTCCACAGAGAGTGTCGGCAGCTGCACTCCTCCCTCCCATCTCCGACGTCGTCTAGAGAA
TCTTAGGTCGCTTTGCACCGGCGAGAAAGGAATTGCCCCCAAAATCGGCATTCCGCTCCATTTCAAGGCCCCTGTTACATGTTTACGAGATGGCGAAGAGCAAGGTGGGA
GTTGCATTTATGGGAGTAATGAGGCCAAAGTTAGTGAAGAAGTCGATTATTTTGGTGGTTATGGCTTGAATTCAGGCAATGACAACAGTTTGTCTCTCCAAATAGCAGCA
ACATCAACAATTTGCAATGGAGTTGCACTAAAAGTGTGGGGGATGTTGTTTCAGTTGGATTATGTGGTTCATTTCCTTGTGGAGTTATCAATTCTTCCTGAATTGCAAAC
TCCATATCAGTTGGCCTGTTATTTGTTATGTTGTTGTGATAGTTGGCAGTTGATTTCTTCATCTGATGCACCAATACTCTCATTTGATGGATGCTCCACTGCCACAAGTT
CACAATTTAATTGTCTCGTCTTTTGTACCTCAATTGCAGTAGCTGGTGTCTCCACATGTTCATTAACACCACTGGTTGATACTACAGCATTGGAGATTGGTAAAGCTCAA
CCTTCTATTTCCTTCTCCATATGTATATCAAACAATGAGGTACTAGGCCTGAAGCACCCAGATGACAAACAATGCATTTTCAATGATAGAGTGAAGGGTCGTCTAAAGGT
TACGAGGGCATTTGGTGCAAGATTTTTGAAACAGGTGCCCCTTGTGATACAACTCACTGACAATGAGAAGTGTATGTGGAAAAATCTCTCTGTGGAAGAGAGCCAGAGGC
TTGCTCGTGAGAATACGAAAGATATCATTGCTTGTGGTTTTGATATTTCAAAAACCTTTATCTTCTCTGATTTTGATTACGTTGGAGGGTGA
Protein sequenceShow/hide protein sequence
MGNTPTALSLASDQTPVSTESVGSCTPPSHLRRRLENLRSLCTGEKGIAPKIGIPLHFKAPVTCLRDGEEQGGSCIYGSNEAKVSEEVDYFGGYGLNSGNDNSLSLQIAA
TSTICNGVALKVWGMLFQLDYVVHFLVELSILPELQTPYQLACYLLCCCDSWQLISSSDAPILSFDGCSTATSSQFNCLVFCTSIAVAGVSTCSLTPLVDTTALEIGKAQ
PSISFSICISNNEVLGLKHPDDKQCIFNDRVKGRLKVTRAFGARFLKQVPLVIQLTDNEKCMWKNLSVEESQRLARENTKDIIACGFDISKTFIFSDFDYVGG