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Spg030519 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030519
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionserine/arginine-rich splicing factor RS40-like isoform X1
Genome locationscaffold6:30547186..30549349
RNA-Seq ExpressionSpg030519
SyntenySpg030519
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650115.1 hypothetical protein Csa_009778 [Cucumis sativus]7.0e-1385.11Show/hide
Query:  LTCLERVS--SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        L C    S  SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  LTCLERVS--SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

KAG6577485.1 Serine/arginine-rich splicing factor RS40, partial [Cucurbita argyrosperma subsp. sororia]9.2e-1388.1Show/hide
Query:  LERVSSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        ++ + SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  LERVSSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

KAG6596928.1 Serine/arginine-rich splicing factor RS40, partial [Cucurbita argyrosperma subsp. sororia]1.6e-12100Show/hide
Query:  SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  SMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

XP_022940255.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita moschata]1.2e-1294.87Show/hide
Query:  VSSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        V  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  VSSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

XP_022965059.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita maxima]4.6e-12100Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

TrEMBL top hitse value%identityAlignment
A0A1S4DXA1 serine/arginine-rich splicing factor RS40-like isoform X12.2e-12100Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

A0A5A7VJB8 Serine/arginine-rich splicing factor RS40-like isoform X12.2e-12100Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

A0A6J1FQ19 serine/arginine-rich splicing factor RS40-like isoform X15.8e-1394.87Show/hide
Query:  VSSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        V  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  VSSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

A0A6J1HKQ4 serine/arginine-rich splicing factor RS40-like isoform X22.2e-12100Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

A0A6J1HMP1 serine/arginine-rich splicing factor RS40-like isoform X12.2e-12100Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

SwissProt top hitse value%identityAlignment
P92964 Serine/arginine-rich splicing factor RS311.5e-1063.83Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGELLAIAYPFVF
        M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKSG      Y FV+
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGELLAIAYPFVF

P92965 Serine/arginine-rich splicing factor RS401.1e-1180.56Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+G
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

P92966 Serine/arginine-rich splicing factor RS418.1e-1280.56Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+G
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

Q9ZPX8 Serine/arginine-rich splicing factor RS31A7.1e-0855.32Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGELLAIAYPFVF
        M+ ++ GNF+YD R  DLERLFS++G+V RVDMKSG      Y FV+
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGELLAIAYPFVF

Arabidopsis top hitse value%identityAlignment
AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-1163.83Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGELLAIAYPFVF
        M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKSG      Y FV+
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGELLAIAYPFVF

AT4G25500.1 arginine/serine-rich splicing factor 357.5e-1380.56Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+G
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

AT4G25500.4 arginine/serine-rich splicing factor 357.5e-1380.56Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+G
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

AT5G52040.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.7e-1380.56Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+G
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG

AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.7e-1380.56Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+G
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCTCCGGCGAATCCAGACTGCGTGAATTGACTTCCGACGGTGGCCTGAAACTCTACACTGCCGAAAAAGAATTGGACTTTGACTTCTTGACTTGTTTGGAAAGAGTAAG
TAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTG
GTGAGCTTCTAGCCATAGCATATCCTTTTGTGTTTTGA
mRNA sequenceShow/hide mRNA sequence
CTCTCCGGCGAATCCAGACTGCGTGAATTGACTTCCGACGGTGGCCTGAAACTCTACACTGCCGAAAAAGAATTGGACTTTGACTTCTTGACTTGTTTGGAAAGAGTAAG
TAGTATGAAGCCGATTTTTTGTGGAAACTTTGAGTATGATGCTCGACAGCCTGATCTGGAAAGACTTTTTAGTCGATATGGAAAAGTTGATAGAGTAGATATGAAATCTG
GTGAGCTTCTAGCCATAGCATATCCTTTTGTGTTTTGA
Protein sequenceShow/hide protein sequence
LSGESRLRELTSDGGLKLYTAEKELDFDFLTCLERVSSMKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGELLAIAYPFVF