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Spg030521 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030521
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA mismatch repair protein MSH5
Genome locationscaffold6:30021518..30022411
RNA-Seq ExpressionSpg030521
SyntenySpg030521
Gene Ontology termsGO:0006298 - mismatch repair (biological process)
GO:0005524 - ATP binding (molecular function)
GO:0030983 - mismatched DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932275.1 DNA mismatch repair protein MSH5 isoform X6 [Cucurbita moschata]1.6e-2489.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
XP_023007696.1 DNA mismatch repair protein MSH5 isoform X1 [Cucurbita maxima]1.6e-2489.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
XP_023007699.1 DNA mismatch repair protein MSH5 isoform X2 [Cucurbita maxima]1.6e-2489.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
XP_023007704.1 DNA mismatch repair protein MSH5 isoform X7 [Cucurbita maxima]1.6e-2489.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
XP_023553301.1 DNA mismatch repair protein MSH5 isoform X1 [Cucurbita pepo subsp. pepo]1.6e-2489.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
TrEMBL top hitse value%identityAlignment
A0A6J1F1R7 DNA mismatch repair protein MSH5 isoform X17.5e-2589.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
A0A6J1L1D5 DNA mismatch repair protein MSH5 isoform X17.5e-2589.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
A0A6J1L3Q2 DNA mismatch repair protein MSH5 isoform X37.5e-2589.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
A0A6J1L5R0 DNA mismatch repair protein MSH5 isoform X77.5e-2589.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
A0A6J1L8E4 DNA mismatch repair protein MSH5 isoform X67.5e-2589.55Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
SwissProt top hitse value%identityAlignment
F4JEP5 DNA mismatch repair protein MSH51.4e-1250.75Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVP+EV+KRAA VLDA  +N +V++L  + +S+ D+ ++DAVDK   LD++K D+  FF+DIF S
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
Q6L4V0 DNA mismatch repair protein MSH53.0e-1049.25Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVP EV++RA +VL  I + + + R+  E L+A D+ YQDAV KLL  D +K DL  FF+++FPS
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
Arabidopsis top hitse value%identityAlignment
AT3G20475.1 MUTS-homologue 51.0e-1350.75Show/hide
Query:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        L GVP+EV+KRAA VLDA  +N +V++L  + +S+ D+ ++DAVDK   LD++K D+  FF+DIF S
Subjt:  LLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTGCTCTGATACCAATTTGTTAGGCGTTCCAGATGAGGTTATTAAGAGAGCAGCCTCTGTTTTGGATGCCATAGGGAATAATAAGCATGTTGAGCGGCTGCACAA
CGAGAATTTATCCGCTCATGATAAGCTATACCAGGATGCGGTCGACAAGTTGCTGGGGCTTGATGTTAACAAGTGTGATCTTAGCCTTTTCTTTCGGGACATATTTCCTT
CGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGTGCTCTGATACCAATTTGTTAGGCGTTCCAGATGAGGTTATTAAGAGAGCAGCCTCTGTTTTGGATGCCATAGGGAATAATAAGCATGTTGAGCGGCTGCACAA
CGAGAATTTATCCGCTCATGATAAGCTATACCAGGATGCGGTCGACAAGTTGCTGGGGCTTGATGTTAACAAGTGTGATCTTAGCCTTTTCTTTCGGGACATATTTCCTT
CGTAA
Protein sequenceShow/hide protein sequence
MTCSDTNLLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS