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Spg030525 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030525
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:33031210..33033284
RNA-Seq ExpressionSpg030525
SyntenySpg030525
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-2447.93Show/hide
Query:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR
        G   TGFSSK  G LV   +  + E ++     +++  S     W + +R      +      T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS 
Subjt:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT
        S+SSTW                           FSV +GS+GIVRGDDV WLHAVFRAK  GGPGGGVT
Subjt:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]4.8e-2855.41Show/hide
Query:  STGFSSKARG--------------------SLVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLR
        STGFSSK  G                     LVSCRVF +EDF VYFINFG VLRK+WVLEVR         P      + TG +      PL  LSVLR
Subjt:  STGFSSKARG--------------------SLVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLR

Query:  DNDAVVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL
        DND VVEIELPVPDT PTSAESS S+SS        S+GIVRGDDV WLHAVFRAK+
Subjt:  DNDAVVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.1e-2738.66Show/hide
Query:  HFKERVKEEGEDEFRGLRLKKIGKSSCKASYCRI------CVQPGNLWFFRSLTYIE---------WEVDGFWNGKQSTGFSSKARGSLVSCRVFENEDF
        HF+ERVKEE E+EFRGLRLKKIGKSSCKA++CRI          G L F  +L+ +E         W+++   +GK    +    RG+  S +  + +  
Subjt:  HFKERVKEEGEDEFRGLRLKKIGKSSCKASYCRI------CVQPGNLWFFRSLTYIE---------WEVDGFWNGKQSTGFSSKARGSLVSCRVFENEDF

Query:  DVYFINFGSVLRKVWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPDTLPT
        ++       +L       V P+ I+        PL TLSVLRDNDAVV                                        EIEL VPDTLPT
Subjt:  DVYFINFGSVLRKVWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPDTLPT

Query:  SAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVTIV
        SAESS S+SSTW                       + S+GIVR +DV WLHAVFRAK+AGG GGGVT+V
Subjt:  SAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVTIV

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]8.2e-2859.7Show/hide
Query:  LVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWF
        LVSCRV ENEDF VYFIN G VLRK+WVLEVR         P      + TG +       L TLSVL DNDAVVEIELPVPDTLPT         +  +
Subjt:  LVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWF

Query:  SVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGV
            GS+GIVRGDDV WLHAV RAK+AGGPGGGV
Subjt:  SVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.4e-2447.93Show/hide
Query:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR
        G   TGFSSK  G LV   +  + E ++     +++  S     W + +R      +      T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS 
Subjt:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT
        S+SSTW                           FSV +GS+GIVRGDDV WLHAVFRAK  GGPGGGVT
Subjt:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase4.5e-2447.93Show/hide
Query:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR
        G   TGFSSK  G LV   +  + E ++     +++  S     W + +R      +      T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS 
Subjt:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT
        S+SSTW                           FSV +GS+GIVRGDDV WLHAVFRAK  GGPGGGVT
Subjt:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT

A0A5D3BQ75 Uncharacterized protein2.3e-2855.41Show/hide
Query:  STGFSSKARG--------------------SLVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLR
        STGFSSK  G                     LVSCRVF +EDF VYFINFG VLRK+WVLEVR         P      + TG +      PL  LSVLR
Subjt:  STGFSSKARG--------------------SLVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYI------PLLTLSVLR

Query:  DNDAVVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL
        DND VVEIELPVPDT PTSAESS S+SS        S+GIVRGDDV WLHAVFRAK+
Subjt:  DNDAVVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKL

A0A5D3CAC6 Uncharacterized protein5.2e-2838.66Show/hide
Query:  HFKERVKEEGEDEFRGLRLKKIGKSSCKASYCRI------CVQPGNLWFFRSLTYIE---------WEVDGFWNGKQSTGFSSKARGSLVSCRVFENEDF
        HF+ERVKEE E+EFRGLRLKKIGKSSCKA++CRI          G L F  +L+ +E         W+++   +GK    +    RG+  S +  + +  
Subjt:  HFKERVKEEGEDEFRGLRLKKIGKSSCKASYCRI------CVQPGNLWFFRSLTYIE---------WEVDGFWNGKQSTGFSSKARGSLVSCRVFENEDF

Query:  DVYFINFGSVLRKVWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPDTLPT
        ++       +L       V P+ I+        PL TLSVLRDNDAVV                                        EIEL VPDTLPT
Subjt:  DVYFINFGSVLRKVWVLEVRPEAIWYRVHTGYIPLLTLSVLRDNDAVV----------------------------------------EIELPVPDTLPT

Query:  SAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVTIV
        SAESS S+SSTW                       + S+GIVR +DV WLHAVFRAK+AGG GGGVT+V
Subjt:  SAESSRSSSSTWFSV-------------------SIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVTIV

A0A5D3CJL4 Retrotrans_gag domain-containing protein4.0e-2859.7Show/hide
Query:  LVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWF
        LVSCRV ENEDF VYFIN G VLRK+WVLEVR         P      + TG +       L TLSVL DNDAVVEIELPVPDTLPT         +  +
Subjt:  LVSCRVFENEDFDVYFINFGSVLRKVWVLEVR---------PEAIWYRVHTGYIP------LLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWF

Query:  SVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGV
            GS+GIVRGDDV WLHAV RAK+AGGPGGGV
Subjt:  SVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGV

A0A5D3DSY7 Putative Retrotransposon protein4.5e-2447.93Show/hide
Query:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR
        G   TGFSSK  G LV   +  + E ++     +++  S     W + +R      +      T   PL TLSVLRDNDAVVEIELPVPDTLPTSAESS 
Subjt:  GKQSTGFSSKARGSLV---SCRVFE-NEDFDVYFINFGSVLRKVWVLEVRPEAIWYRV----HTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSR

Query:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT
        S+SSTW                           FSV +GS+GIVRGDDV WLHAVFRAK  GGPGGGVT
Subjt:  SSSSTW---------------------------FSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CACTTTAAGGAGAGAGTGAAGGAAGAAGGAGAAGATGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCTATTGCAGAATCTGCGTTCA
ACCTGGCAACCTCTGGTTTTTTAGAAGCTTGACCTACATCGAATGGGAAGTTGATGGGTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAAGAGGATCTC
TGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGGTGTGGGTGTTGGAAGTTAGGCCCGAGGCTATATGG
TACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGC
TGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCATCAGGGATCGTTAGAGGTGACGATGTCTATTGGCTTCACGCCGTCTTTCGGGCTAAGC
TAGCAGGTGGTCCGGGAGGGGGTGTGACAATAGTAGTTTGTATTAATACTGTATAA
mRNA sequenceShow/hide mRNA sequence
CACTTTAAGGAGAGAGTGAAGGAAGAAGGAGAAGATGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGCTCATGCAAAGCCAGCTATTGCAGAATCTGCGTTCA
ACCTGGCAACCTCTGGTTTTTTAGAAGCTTGACCTACATCGAATGGGAAGTTGATGGGTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAAGAGGATCTC
TGGTAAGTTGTAGAGTGTTCGAAAATGAAGATTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGGTGTGGGTGTTGGAAGTTAGGCCCGAGGCTATATGG
TACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGC
TGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCATCAGGGATCGTTAGAGGTGACGATGTCTATTGGCTTCACGCCGTCTTTCGGGCTAAGC
TAGCAGGTGGTCCGGGAGGGGGTGTGACAATAGTAGTTTGTATTAATACTGTATAA
Protein sequenceShow/hide protein sequence
HFKERVKEEGEDEFRGLRLKKIGKSSCKASYCRICVQPGNLWFFRSLTYIEWEVDGFWNGKQSTGFSSKARGSLVSCRVFENEDFDVYFINFGSVLRKVWVLEVRPEAIW
YRVHTGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVYWLHAVFRAKLAGGPGGGVTIVVCINTV