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Spg030543 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030543
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:32828829..32829534
RNA-Seq ExpressionSpg030543
SyntenySpg030543
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051940.1 hypothetical protein E6C27_scaffold60G003970 [Cucumis melo var. makuwa]2.0e-0859.15Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAESS ++SS F N+V+SG HLV V
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]8.9e-0956.52Show/hide
Query:  MTEILSSRLYGIVCTQVEIELPVPDTLPTSAESSRTSSSD----------------FPNRVMSGRHLVY
        MTEILS RLYG VCTQV+IELP+PDTLPTSAESS ++ +                 F N+VMSG HLV+
Subjt:  MTEILSSRLYGIVCTQVEIELPVPDTLPTSAESSRTSSSD----------------FPNRVMSGRHLVY

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.0e-0958.57Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVY
        MTEILS RL+G VCTQ                 VEIELPVPDTLPTS ESS ++SS F N+VMSG HLV+
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVY

TYK12219.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-0859.15Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAESS ++SS F N+V+SG HLV V
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]3.0e-0959.15Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV
        MTEILS RLYG VCT                  VEIELPVPD LPTSAESS ++SS F N+VMSG +LVYV
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV

TrEMBL top hitse value%identityAlignment
A0A5A7U9T8 Uncharacterized protein9.6e-0959.15Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAESS ++SS F N+V+SG HLV V
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV

A0A5A7V638 Uncharacterized protein4.3e-0956.52Show/hide
Query:  MTEILSSRLYGIVCTQVEIELPVPDTLPTSAESSRTSSSD----------------FPNRVMSGRHLVY
        MTEILS RLYG VCTQV+IELP+PDTLPTSAESS ++ +                 F N+VMSG HLV+
Subjt:  MTEILSSRLYGIVCTQVEIELPVPDTLPTSAESSRTSSSD----------------FPNRVMSGRHLVY

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.5e-0958.57Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVY
        MTEILS RL+G VCTQ                 VEIELPVPDTLPTS ESS ++SS F N+VMSG HLV+
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVY

A0A5D3CPH9 Ty3-gypsy retrotransposon protein9.6e-0959.15Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAESS ++SS F N+V+SG HLV V
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV

A0A5D3DE96 Uncharacterized protein1.5e-0959.15Show/hide
Query:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV
        MTEILS RLYG VCT                  VEIELPVPD LPTSAESS ++SS F N+VMSG +LVYV
Subjt:  MTEILSSRLYGIVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAAATATTGAGCTCGAGGCTATATGGTATCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTGATTTTCCAAACCGAGTTATGTCAGGGCGACACCTCGTGTATGTTGAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAAATATTGAGCTCGAGGCTATATGGTATCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTGATTTTCCAAACCGAGTTATGTCAGGGCGACACCTCGTGTATGTTGAA
Protein sequenceShow/hide protein sequence
MTEILSSRLYGIVCTQVEIELPVPDTLPTSAESSRTSSSDFPNRVMSGRHLVYVE