; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030556 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030556
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold6:30324835..30328202
RNA-Seq ExpressionSpg030556
SyntenySpg030556
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-3267.19Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVD+S + +QRTS FDRIKP TTR SVFQR+SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+HS + SRMKRK SV INT+GSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-3155.87Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEV++S + +QRTS FDRIKPSTTR SVFQR+SMAT EEENQC  STSTR SAF+RL++STSKK R STS FD LK+TNDQ +R+M  L+ K+F E NND
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  E-KLHSSILSRMKRKFSVLINTKGSLKFKGSHALRCSS------FSPNSKVLTRFAAVPSLQVREGS-HALRCSSFSQS
        + K+HS + SRMKRK SV I+T+GSL  K    +  +S       SP SK+LT       +  R GS H L+    S S
Subjt:  E-KLHSSILSRMKRKFSVLINTKGSLKFKGSHALRCSS------FSPNSKVLTRFAAVPSLQVREGS-HALRCSSFSQS

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.6e-3265.62Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVD+S + +QRTS FDRIKP TTR SVFQR+SMAT EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+H+ + SRMKRK SV INT+GSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.6e-3265.62Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVD+S + +QRTS FDRIKP TTR SVFQR+SMAT EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+H+ + SRMKRK SV INT+GSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]6.6e-3265.62Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EE+D+S + +Q+TS FDRIKP TTR SVFQR+SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+HS + SRMKRK S+ INTKGSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein6.4e-3367.19Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVD+S + +QRTS FDRIKP TTR SVFQR+SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+HS + SRMKRK SV INT+GSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

A0A5A7UI09 Retrotransposon gag protein4.2e-3265.62Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVD+S + +QRTS FDRIKP TTR SVFQR+SMAT EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+H+ + SRMKRK SV INT+GSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

A0A5D3BBF9 Gag protease polyprotein5.5e-3266.41Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVD+S + +QRTS FDRIKP TTR  VFQR+SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+HS + SRMKRK SV INT+GSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

A0A5D3CCI8 Retrotransposon gag protein4.2e-3265.62Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EEVD+S + +QRTS FDRIKP TTR SVFQR+SMAT EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+H+ + SRMKRK SV INT+GSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

A0A5D3D5Q0 Gag protease polyprotein3.2e-3265.62Show/hide
Query:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND
        EE+D+S + +Q+TS FDRIKP TTR SVFQR+SMAT EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N+D
Subjt:  EEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPKRKMDNLELKLFDEVNND

Query:  EKLHSSILSRMKRKFSVLINTKGSLKFK
        +K+HS + SRMKRK S+ INTKGSL  K
Subjt:  EKLHSSILSRMKRKFSVLINTKGSLKFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGCAAAGGAACTCTTCTCCAAAACTTCCCACAAAAAAGAAAAGGGAAACTTTGCAACTTCCTACTGCATCCATGTAGAAGAGGTTGACAGTTCTAAGAAGGGTGA
ACAAAGGACTTCCGCCTTCGATCGCATTAAGCCTTCAACTACTCGACCTTCAGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCA
CCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACTTTCAACATCTTTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAA
AGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGCATTTTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAA
TACGAAAGGTTCCTTGAAGTTCAAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTC
GAGAAGGTTCTCATGCGCTTCGTTGCAGTTCCTTCTCTCAAAGTTTGAGAAGGTTCTCACGCACTTCGTTGCAGTTCCTTCTCTCCAAATGCGAAGGTTCTCTCACGCGC
TTCACTGTAGTTCTGTTGCAATTCCTTCTCTCCCACGCGCTTCGCTGCAGTTCCTTCTCTCTAAGTTCGAAGGTTCTCACAGTTCCTTCTCTCCAAGTTCGAAGGTTTCT
CCTGCGCTTCGCTGCAATTCTGAGTTTCTCTCCAAGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCAAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCTCTC
CAAGTTCAAGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGAAGGTTCTCACACGCTTCGTTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTCT
CACGCACTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGAAGGAAGTTCGATAAGGTTCTCACGCACTTCGTTGCAGTTCCTTCTCTTCAGATTCGAAGGTCGATCCAAAA
GGACATCAAGCCAGCAGGTCGATCATCCAGGAAGATCAACAAGCCAACAAGGCGATCCAAGAGATCATCAAGCCAACAGGTCGATCCAAGAGATCACCAAGTCAGCAGGC
CGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGACCAATCCAAAAGAACATCAAGCCAACAGGTCGATCATTCAAGAAGATCA
ACAAGCCAACGAGTCGATCTAAGAGATCATCAAGCCAATAGGTCGATCCAAGAGATCATCAAGCTAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACAAGTCGATC
CAAGAGATCATCAAGCCAACAGGCCGATCTAAGAGATCATCAAGCCAGCAGGTCGATCATCCAGGAAGATCAACAAAGCCAACAAGCCGATCCAAGAGATCATCAAGCCA
ACAGGCCGATCCAAGAGATCATCAAGCTAGCAGGCCGATCATCCAGAAAGATCAACAAGCCAACAAGCCGATCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGCAAAGGAACTCTTCTCCAAAACTTCCCACAAAAAAGAAAAGGGAAACTTTGCAACTTCCTACTGCATCCATGTAGAAGAGGTTGACAGTTCTAAGAAGGGTGA
ACAAAGGACTTCCGCCTTCGATCGCATTAAGCCTTCAACTACTCGACCTTCAGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTTTGGTGTCCA
CCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGACTTTCAACATCTTTTTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAA
AGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGCATTTTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAA
TACGAAAGGTTCCTTGAAGTTCAAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTC
GAGAAGGTTCTCATGCGCTTCGTTGCAGTTCCTTCTCTCAAAGTTTGAGAAGGTTCTCACGCACTTCGTTGCAGTTCCTTCTCTCCAAATGCGAAGGTTCTCTCACGCGC
TTCACTGTAGTTCTGTTGCAATTCCTTCTCTCCCACGCGCTTCGCTGCAGTTCCTTCTCTCTAAGTTCGAAGGTTCTCACAGTTCCTTCTCTCCAAGTTCGAAGGTTTCT
CCTGCGCTTCGCTGCAATTCTGAGTTTCTCTCCAAGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCAAATTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCTCTC
CAAGTTCAAGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGAAGGTTCTCACACGCTTCGTTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTCT
CACGCACTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGAAGGAAGTTCGATAAGGTTCTCACGCACTTCGTTGCAGTTCCTTCTCTTCAGATTCGAAGGTCGATCCAAAA
GGACATCAAGCCAGCAGGTCGATCATCCAGGAAGATCAACAAGCCAACAAGGCGATCCAAGAGATCATCAAGCCAACAGGTCGATCCAAGAGATCACCAAGTCAGCAGGC
CGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGACCAATCCAAAAGAACATCAAGCCAACAGGTCGATCATTCAAGAAGATCA
ACAAGCCAACGAGTCGATCTAAGAGATCATCAAGCCAATAGGTCGATCCAAGAGATCATCAAGCTAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACAAGTCGATC
CAAGAGATCATCAAGCCAACAGGCCGATCTAAGAGATCATCAAGCCAGCAGGTCGATCATCCAGGAAGATCAACAAAGCCAACAAGCCGATCCAAGAGATCATCAAGCCA
ACAGGCCGATCCAAGAGATCATCAAGCTAGCAGGCCGATCATCCAGAAAGATCAACAAGCCAACAAGCCGATCCTAA
Protein sequenceShow/hide protein sequence
MTAKELFSKTSHKKEKGNFATSYCIHVEEVDSSKKGEQRTSAFDRIKPSTTRPSVFQRMSMATTEEENQCLVSTSTRPSAFQRLSVSTSKKSRLSTSFFDRLKVTNDQPK
RKMDNLELKLFDEVNNDEKLHSSILSRMKRKFSVLINTKGSLKFKGSHALRCSSFSPNSKVLTRFAAVPSLQVREGSHALRCSSFSQSLRRFSRTSLQFLLSKCEGSLTR
FTVVLLQFLLSHALRCSSFSLSSKVLTVPSLQVRRFLLRFAAILSFSPSSHALRCSSFSKFEGSHALRCSSFSPSSRRFSRASLQFLLSKFEKVLTRFVAVPSLQIRRFS
HALRCSSFSPSSRRKFDKVLTHFVAVPSLQIRRSIQKDIKPAGRSSRKINKPTRRSKRSSSQQVDPRDHQVSRPIIQEDQQANKSIQQIIKPTDQSKRTSSQQVDHSRRS
TSQRVDLRDHQANRSIQEIIKLAGRSSKKINKPTSRSKRSSSQQADLRDHQASRSIIQEDQQSQQADPRDHQANRPIQEIIKLAGRSSRKINKPTSRS