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Spg030557 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030557
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:32478245..32484703
RNA-Seq ExpressionSpg030557
SyntenySpg030557
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1563.86Show/hide
Query:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI
        PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP SAESSRS+SS W+ELY ESVH+
Subjt:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.1e-1664.37Show/hide
Query:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS
        L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML          VEIEL VPDTLP SAESS S+S
Subjt:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.1e-1664.37Show/hide
Query:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS
        L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML          VEIEL VPDTLP SAESS S+S
Subjt:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]1.8e-1159.09Show/hide
Query:  YRVHKGYIPLLTLSVLHDNDAVV------------SAGRAPLHCRTSKRWLYWACPTQRRSIMLVE
        YRVH  YI LLTLSVL DN+ ++            SAGR PLH RTSKRWLYWAC TQR  +MLV+
Subjt:  YRVHKGYIPLLTLSVLHDNDAVV------------SAGRAPLHCRTSKRWLYWACPTQRRSIMLVE

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1563.86Show/hide
Query:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI
        PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP SAESSRS+SS W+ELY ESVH+
Subjt:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase5.7e-1663.86Show/hide
Query:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI
        PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP SAESSRS+SS W+ELY ESVH+
Subjt:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI

A0A5A7VGQ5 Uncharacterized protein5.2e-1764.37Show/hide
Query:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS
        L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML          VEIEL VPDTLP SAESS S+S
Subjt:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS

A0A5D3BG85 Uncharacterized protein5.2e-1764.37Show/hide
Query:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS
        L TLSVL DNDAVVSAG            RAPLH RTSKRWLYWACPT RRS+ML          VEIEL VPDTLP SAESS S+S
Subjt:  LLTLSVLHDNDAVVSAG------------RAPLHCRTSKRWLYWACPTQRRSIML----------VEIELPVPDTLPASAESSRSSS

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein8.6e-1259.09Show/hide
Query:  YRVHKGYIPLLTLSVLHDNDAVV------------SAGRAPLHCRTSKRWLYWACPTQRRSIMLVE
        YRVH  YI LLTLSVL DN+ ++            SAGR PLH RTSKRWLYWAC TQR  +MLV+
Subjt:  YRVHKGYIPLLTLSVLHDNDAVV------------SAGRAPLHCRTSKRWLYWACPTQRRSIMLVE

A0A5D3BTP3 Reverse transcriptase5.7e-1663.86Show/hide
Query:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI
        PL TLSVL DNDAVVSAG+APL     +RW     PT    +  S  LVEIELPVPD LP SAESSRS+SS W+ELY ESVH+
Subjt:  PLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPT----QRRSIMLVEIELPVPDTLPASAESSRSSSSAWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTCAGCCCGAGGCTATATGGTACCGTGTGCACAAAGGTTA
TATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATTGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCC
CTACACAGCGTAGATCAATCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTGCGTGGGTGGAGTTG
TATATTGAGTCTGTCCATATTGTAAATGTTTTAGATATTCCATGCAAGGAAAGGCCTCAAGATGCAAGACACGTGGTGGTAATGCAAGCCAAAGTGGATTCTAGGCCTCA
TCAGCGTCGGGATGCCCATCATCGGAGTCAAGATGCTAACCAAATAAGGAAACTACTTGGGGATCAAGCTGGCGAACAGTGTCGCGATGCTAGGGCAATCCGACAGCAAT
GTTCCGTATCTGAAGGGACAGCGTCGCGACGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCCGGGCGTTTCTGGACAAATTGGTTGAGAATCTCGTTTTCATTTCTTCAGGCCAAGAGAAAATAGGTCAGCCCGAGGCTATATGGTACCGTGTGCACAAAGGTTA
TATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATTGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCC
CTACACAGCGTAGATCAATCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAGCGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTGCGTGGGTGGAGTTG
TATATTGAGTCTGTCCATATTGTAAATGTTTTAGATATTCCATGCAAGGAAAGGCCTCAAGATGCAAGACACGTGGTGGTAATGCAAGCCAAAGTGGATTCTAGGCCTCA
TCAGCGTCGGGATGCCCATCATCGGAGTCAAGATGCTAACCAAATAAGGAAACTACTTGGGGATCAAGCTGGCGAACAGTGTCGCGATGCTAGGGCAATCCGACAGCAAT
GTTCCGTATCTGAAGGGACAGCGTCGCGACGCTAG
Protein sequenceShow/hide protein sequence
MFRAFLDKLVENLVFISSGQEKIGQPEAIWYRVHKGYIPLLTLSVLHDNDAVVSAGRAPLHCRTSKRWLYWACPTQRRSIMLVEIELPVPDTLPASAESSRSSSSAWVEL
YIESVHIVNVLDIPCKERPQDARHVVVMQAKVDSRPHQRRDAHHRSQDANQIRKLLGDQAGEQCRDARAIRQQCSVSEGTASRR