; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg030560 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030560
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold6:31800084..31812328
RNA-Seq ExpressionSpg030560
SyntenySpg030560
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]1.5e-1252.22Show/hide
Query:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        A+A  I K + ES K  + +K+N L+      S +     +P VMSVMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q RE
Subjt:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]1.5e-1252.22Show/hide
Query:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        A+A  I K + ES K  + +K+N L+      S +     +P VMSVMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q RE
Subjt:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.5e-1252.22Show/hide
Query:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        A+A  I K + ES K  + +K+N L+      S +     +P VMSVMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q RE
Subjt:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.5e-1252.22Show/hide
Query:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        A+A  I K + ES K  + +K+N L+      S +     +P VMSVMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q RE
Subjt:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.5e-1252.22Show/hide
Query:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        A+A  I K + ES K  + +K+N L+      S +     +P VMSVMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q RE
Subjt:  AVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein4.1e-1147.19Show/hide
Query:  VASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        VA RI K + ES K  + +K+NSL+++    S + K   +P V SVMMAD+  +  M EMERK+N LMKA++ERDHEI   + Q++ RE
Subjt:  VASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

A0A5A7UG56 Ty3-gypsy retrotransposon protein7.0e-1143.88Show/hide
Query:  IKEDHTPLAVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        I+E      VA  I K + ES K  + +K+N L+++    S + K   +P VMSV+MAD+  +  M EMERK+N LMKA++ERDHEI  L+ Q++ RE
Subjt:  IKEDHTPLAVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

A0A5A7VCU1 Ty3-gypsy retrotransposon protein7.0e-1147.19Show/hide
Query:  VASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        V   I K + ES K  + +K+NSL+++    S + K   +P VMSVMM D+  +  MAEMERK+N LMK ++ERDHEI  L+ Q+Q RE
Subjt:  VASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.1e-1148.31Show/hide
Query:  VASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        VA  I K + ES K  + +K+N L+++   +S + K   +P VMSVMMAD+  +  MAEMERK+N LMKA++ERDHEI  L+ Q++ RE
Subjt:  VASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

A0A5D3C3J8 Ty3-gypsy retrotransposon protein2.4e-1144.9Show/hide
Query:  IKEDHTPLAVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE
        I+E      VA  I K + ES K  + +K+N L+++    S + K   +P VMSVMMAD+  +  MAEMERK+N LM  ++ERDHEI  L+ Q+Q RE
Subjt:  IKEDHTPLAVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQNRE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGATGATGGAAATGGAGGAAGAAGATGATGAAGATGAAGATGGAAATGGAGGAATTGAGATCAAGGAGGATCATACTCCCCTTGCTGTTGCAAGCAGGATCTC
AAAGTTGATTGAAGAATCCTCTAAGGACAAGGTTGCAGTCAAAGACAACTCGCTGTTCGAATCTGTCACTCCAACATCTGAGCAACCAAAGGATACACTAAATCCTCATG
TGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCCTAATGAAGGCAATTGATGAAAGAGATCATGAGATTGCC
TATTTAAAGAACCAGCTGCAAAATCGAGAGATTCGTCTCGACGTTGTCCTATTCTTGCTGCCCAAGCCAAGGGATAAGGCTGGGTACCTTATCCTAGTAACATTATGTGA
TACGATCCGCATTGAATTTGATACAGACGTATTGATCCAAAGCGTCCATGTAGTAGACATGCGAGCGGGGGTATCCTATGCAATGAATTTGCATAAGACTGGACCACGAA
ATAGTCAACCACTAGTTGTCTATTCGGTCCGTCTGCTAGCTCGTAAAGGCCTCAAGGTCCATCTCCAGCGAAATTTTCTTCCTCCTCTCGAGTTGCTCTTCGTCGCCGGC
CAGTGGGTGTTCGTCTCCAGCGTCTTCTCCAGCGTTAAAGGCAGTGCAGTAGCCTCGTGGATTCAGCGTGCATGGGTGCATTTAGTCGGCCAAATAGAGAATCAAAGAGC
CATGATTAGGATGGCGTCTGAGTTTTCCAGTGGTAAGGTTGGGTTAAATTTTAAAATCACAAAAAGTTTGTCTCTGAAACAGAAGATGGTGGGAAAGATTAAAGGAGCTT
TGGATTCGATAGTCGCAGAAGAGAAGGGCGAAACATTGGAAGCGATAGACACAAATGAAGAAGAATCATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGATGATGGAAATGGAGGAAGAAGATGATGAAGATGAAGATGGAAATGGAGGAATTGAGATCAAGGAGGATCATACTCCCCTTGCTGTTGCAAGCAGGATCTC
AAAGTTGATTGAAGAATCCTCTAAGGACAAGGTTGCAGTCAAAGACAACTCGCTGTTCGAATCTGTCACTCCAACATCTGAGCAACCAAAGGATACACTAAATCCTCATG
TGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCCTAATGAAGGCAATTGATGAAAGAGATCATGAGATTGCC
TATTTAAAGAACCAGCTGCAAAATCGAGAGATTCGTCTCGACGTTGTCCTATTCTTGCTGCCCAAGCCAAGGGATAAGGCTGGGTACCTTATCCTAGTAACATTATGTGA
TACGATCCGCATTGAATTTGATACAGACGTATTGATCCAAAGCGTCCATGTAGTAGACATGCGAGCGGGGGTATCCTATGCAATGAATTTGCATAAGACTGGACCACGAA
ATAGTCAACCACTAGTTGTCTATTCGGTCCGTCTGCTAGCTCGTAAAGGCCTCAAGGTCCATCTCCAGCGAAATTTTCTTCCTCCTCTCGAGTTGCTCTTCGTCGCCGGC
CAGTGGGTGTTCGTCTCCAGCGTCTTCTCCAGCGTTAAAGGCAGTGCAGTAGCCTCGTGGATTCAGCGTGCATGGGTGCATTTAGTCGGCCAAATAGAGAATCAAAGAGC
CATGATTAGGATGGCGTCTGAGTTTTCCAGTGGTAAGGTTGGGTTAAATTTTAAAATCACAAAAAGTTTGTCTCTGAAACAGAAGATGGTGGGAAAGATTAAAGGAGCTT
TGGATTCGATAGTCGCAGAAGAGAAGGGCGAAACATTGGAAGCGATAGACACAAATGAAGAAGAATCATCTTAG
Protein sequenceShow/hide protein sequence
MEMMMEMEEEDDEDEDGNGGIEIKEDHTPLAVASRISKLIEESSKDKVAVKDNSLFESVTPTSEQPKDTLNPHVMSVMMADVDQDERMAEMERKLNLLMKAIDERDHEIA
YLKNQLQNREIRLDVVLFLLPKPRDKAGYLILVTLCDTIRIEFDTDVLIQSVHVVDMRAGVSYAMNLHKTGPRNSQPLVVYSVRLLARKGLKVHLQRNFLPPLELLFVAG
QWVFVSSVFSSVKGSAVASWIQRAWVHLVGQIENQRAMIRMASEFSSGKVGLNFKITKSLSLKQKMVGKIKGALDSIVAEEKGETLEAIDTNEEESS