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Spg030562 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030562
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:32916968..32922505
RNA-Seq ExpressionSpg030562
SyntenySpg030562
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.2e-1079.17Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
        MS LH V    FNVS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT+
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.1e-1051.11Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHR----GSTPEPTVDQLEREFYANIDENE
        MSGLH V    FNVS+GSTGIVRGDDVCWLHAVFR K A  PG  VT+  + R         R      T +PT  Q ER     I +NE
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHR----GSTPEPTVDQLEREFYANIDENE
KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.2e-1080.85Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        MSGLH V    FNVS+GSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]6.2e-1051.16Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHRGSTPEPTVDQLEREFYANIDENE
        MSGLH V    FN+S+ STGIVRGDDVCWLHAVFRAK  GGP GGV      R        ++  T +PT  Q ER       +NE
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHRGSTPEPTVDQLEREFYANIDENE
TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.2e-1079.17Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
        MS LH V    FNVS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT+
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein6.0e-1179.17Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
        MS LH V    FNVS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT+
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
A0A5A7V638 Uncharacterized protein1.0e-1051.11Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHR----GSTPEPTVDQLEREFYANIDENE
        MSGLH V    FNVS+GSTGIVRGDDVCWLHAVFR K A  PG  VT+  + R         R      T +PT  Q ER     I +NE
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHR----GSTPEPTVDQLEREFYANIDENE
A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein3.0e-1080.85Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
        MSGLH V    FNVS+GSTGIVRGDDVC LH VFRAK AGGPGGGVT
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVT
A0A5D3BMJ4 Retrotrans_gag domain-containing protein3.0e-1051.16Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHRGSTPEPTVDQLEREFYANIDENE
        MSGLH V    FN+S+ STGIVRGDDVCWLHAVFRAK  GGP GGV      R        ++  T +PT  Q ER       +NE
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHRGSTPEPTVDQLEREFYANIDENE
A0A5D3CJX3 CCHC-type domain-containing protein6.0e-1179.17Show/hide
Query:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
        MS LH V    FNVS+GSTGIVRGDDVCWLHAVFRAK  GGPGGGVT+
Subjt:  MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGCTGCACCATGTGGATGTTGAAAGGTTCAATGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGTGCTAA
GCTAGCAGGTGGTCCGGGAGGGGGTGTGACATCATGTGTTGAACAGAGGGCAGCTGGCGTTATGGTTGTTACACACAGAGGGAGCACACCGGAGCCCACTGTTGATCAAC
TAGAACGGGAGTTCTACGCCAACATCGATGAAAATGAAGGATTCTTGGTTATTGTTTGTGGAATTGTTCTCGACTGGAGCCTTGGAGTTATTAATTCTCTGTTTAGTTTG
CAAGACGTCACCCACACTGTTTTCAATGAAATATTAGTTGCTTCCTCAAATGAGCAACTAAATGCCCAGTGGAGGTCCAGAGTCCCAAAGAGTTCAAATGATATAAACTT
GTTTGATAAGGAGATTATTGGCACTGCCAATCTGGCTAGGCTTCAAAAAGAAACCTTTTGCTTGAGCATTCCTTCTAGCCTAGTCATGACTGCAGCAAAAGTTCTGAGGC
TAGTTGGTGATAAGTTTGTGGCAAGGGTATACTGCACCATAAAGTGGGTCATCTCATGCTTAAAAGCTTATGACTCAGTGCTTGGTTTTGCAGGATGCTCAGAAAATATT
GCTGAGCGACTTGAAGGAGCAAAATCTGTGCTCCAGCAAAGCAGGGAGCAAAACTGCCACGGATTACCAGTCGTCTACTGCTTGATCGGTAGAGCTTCATTGGAGTTGAA
ACATATTCCAAAAAATCCGGAGTTCCGGGAGGATCCCGCTGATAATACTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGCTGCACCATGTGGATGTTGAAAGGTTCAATGTTTCAATAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGTGCTAA
GCTAGCAGGTGGTCCGGGAGGGGGTGTGACATCATGTGTTGAACAGAGGGCAGCTGGCGTTATGGTTGTTACACACAGAGGGAGCACACCGGAGCCCACTGTTGATCAAC
TAGAACGGGAGTTCTACGCCAACATCGATGAAAATGAAGGATTCTTGGTTATTGTTTGTGGAATTGTTCTCGACTGGAGCCTTGGAGTTATTAATTCTCTGTTTAGTTTG
CAAGACGTCACCCACACTGTTTTCAATGAAATATTAGTTGCTTCCTCAAATGAGCAACTAAATGCCCAGTGGAGGTCCAGAGTCCCAAAGAGTTCAAATGATATAAACTT
GTTTGATAAGGAGATTATTGGCACTGCCAATCTGGCTAGGCTTCAAAAAGAAACCTTTTGCTTGAGCATTCCTTCTAGCCTAGTCATGACTGCAGCAAAAGTTCTGAGGC
TAGTTGGTGATAAGTTTGTGGCAAGGGTATACTGCACCATAAAGTGGGTCATCTCATGCTTAAAAGCTTATGACTCAGTGCTTGGTTTTGCAGGATGCTCAGAAAATATT
GCTGAGCGACTTGAAGGAGCAAAATCTGTGCTCCAGCAAAGCAGGGAGCAAAACTGCCACGGATTACCAGTCGTCTACTGCTTGATCGGTAGAGCTTCATTGGAGTTGAA
ACATATTCCAAAAAATCCGGAGTTCCGGGAGGATCCCGCTGATAATACTGCATGA
Protein sequenceShow/hide protein sequence
MSGLHHVDVERFNVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTSCVEQRAAGVMVVTHRGSTPEPTVDQLEREFYANIDENEGFLVIVCGIVLDWSLGVINSLFSL
QDVTHTVFNEILVASSNEQLNAQWRSRVPKSSNDINLFDKEIIGTANLARLQKETFCLSIPSSLVMTAAKVLRLVGDKFVARVYCTIKWVISCLKAYDSVLGFAGCSENI
AERLEGAKSVLQQSREQNCHGLPVVYCLIGRASLELKHIPKNPEFREDPADNTA