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Spg030569 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030569
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold6:32590918..32591736
RNA-Seq ExpressionSpg030569
SyntenySpg030569
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG8491357.1 hypothetical protein CXB51_014478 [Gossypium anomalum]1.1e-2251.28Show/hide
Query:  LDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNPQQNRVLA-----RVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSS
        +DPEIERTFR+R+R+  + +    N  ++ QG  +  N  QN +L      R +R YA P+FD+LNPGI  P+IEA+ FE+KPVMFQML+TVGQF  +++
Subjt:  LDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNPQQNRVLA-----RVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSS

Query:  EYPHLHLKSFLGVSDSF
        E PHLHL+ F+ VS+SF
Subjt:  EYPHLHLKSFLGVSDSF

XP_017216983.1 PREDICTED: uncharacterized protein LOC108194534 [Daucus carota subsp. sativus]1.9e-2247.73Show/hide
Query:  MSDPPGVRFELDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNPQQNRVL---ARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTV
        MS+   V F  DP IERTF RRR+ QR+ + +   V       + L+ P    ++    R IR YA P F+ELN GI  P I+A  FE+KPVMFQML+T+
Subjt:  MSDPPGVRFELDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNPQQNRVL---ARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTV

Query:  GQFHGLSSEYPHLHLKSFLGVSDSFVIQGALE
        GQF G+ +E PHLHL+ F+ +SDSF  QG  E
Subjt:  GQFHGLSSEYPHLHLKSFLGVSDSFVIQGALE

XP_017233063.1 PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus]4.2e-2247.1Show/hide
Query:  MSDPPGVRFELDPEIERTFRRRRREQRRNQNSM---------ANVPHLPQGPEDLVNPQQNRVLARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMF
        MS    V F  DPEIERTF RRR+ QR+ + +           ++P +P+G   +V+ +      R IR YA P F+ELN GI  P I+A  FE+KPVMF
Subjt:  MSDPPGVRFELDPEIERTFRRRRREQRRNQNSM---------ANVPHLPQGPEDLVNPQQNRVLARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMF

Query:  QMLKTVGQFHGLSSEYPHLHLKSFLGVSDSFVIQGALE
        QML+T+GQF G+ +E PHLHL+ F+ +SDSF  QG  E
Subjt:  QMLKTVGQFHGLSSEYPHLHLKSFLGVSDSFVIQGALE

XP_022929949.1 uncharacterized protein LOC111436411 [Cucurbita moschata]9.1e-2550.36Show/hide
Query:  MSDPPGVRFELDPEIERTFRRR-RREQRRNQNSMANVPHLPQGPEDLVNP----QQNRVLA----------RVIRAYAFPMFDELNPGIAHPQIEAENFE
        M+ P G+ F LDPEIERTFRRR +++++  + ++  +    Q   +  NP     Q R+ A          R IRAYA P  +ELNP I  P+I+   FE
Subjt:  MSDPPGVRFELDPEIERTFRRR-RREQRRNQNSMANVPHLPQGPEDLVNP----QQNRVLA----------RVIRAYAFPMFDELNPGIAHPQIEAENFE

Query:  MKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSF
        +KPVMFQML+T+GQFHGL  E PHLHLKSFLGVSDSF
Subjt:  MKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSF

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]2.0e-2454.92Show/hide
Query:  LDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNP---QQNRVLARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEY
        +DPEIERTFR+RR+EQ+  +           G  +  NP     +R  AR IR YA PMF+ELNPGI  P+I+A +FE+KPVMFQML+TVGQF G  +E 
Subjt:  LDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNP---QQNRVLARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEY

Query:  PHLHLKSFLGVSDSFVIQGALE
        PHLH++SFL VSDSF +QG  E
Subjt:  PHLHLKSFLGVSDSFVIQGALE

TrEMBL top hitse value%identityAlignment
A0A6J1EEI2 uncharacterized protein LOC1114333942.1e-1945.74Show/hide
Query:  RFELDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNPQQNRVLARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEY
        + EL  ++ R F         N   MAN   +      L + ++     R IRAYA P  +ELNP I  P+++A  FE+KPVMFQML+T+GQFHGL SE 
Subjt:  RFELDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNPQQNRVLARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEY

Query:  PHLHLKSFLGVSDSFVIQGALERIVGSSI
        PHLHLKSFLGVSDSF  Q   + ++  S+
Subjt:  PHLHLKSFLGVSDSFVIQGALERIVGSSI

A0A6J1EQ90 uncharacterized protein LOC1114364114.4e-2550.36Show/hide
Query:  MSDPPGVRFELDPEIERTFRRR-RREQRRNQNSMANVPHLPQGPEDLVNP----QQNRVLA----------RVIRAYAFPMFDELNPGIAHPQIEAENFE
        M+ P G+ F LDPEIERTFRRR +++++  + ++  +    Q   +  NP     Q R+ A          R IRAYA P  +ELNP I  P+I+   FE
Subjt:  MSDPPGVRFELDPEIERTFRRR-RREQRRNQNSMANVPHLPQGPEDLVNP----QQNRVLA----------RVIRAYAFPMFDELNPGIAHPQIEAENFE

Query:  MKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSF
        +KPVMFQML+T+GQFHGL  E PHLHLKSFLGVSDSF
Subjt:  MKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSF

A0A6J1G7Q6 uncharacterized protein LOC1114515982.5e-2065.79Show/hide
Query:  RVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSFVIQGALERIV
        R IRAYA P  +ELNP I  P+++A  FE+KPVMFQML+T+GQFHGLSS+ PHLHLKSFLGVSDSF  QG  + ++
Subjt:  RVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSFVIQGALERIV

A0A6J1H7E4 uncharacterized protein LOC1114611681.7e-2150.86Show/hide
Query:  NVPHLPQGPEDLVNP----QQNRVLA----------RVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSD
        N+  + Q  ++  NP     Q R++A          R IRAYA P  DELNP I  P+++A  FE+KPVMFQML+T+GQFHGL SE PHLHLKSFLGVSD
Subjt:  NVPHLPQGPEDLVNP----QQNRVLA----------RVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSD

Query:  SFVIQGALERIVGSSI
        SF  QG  + ++  S+
Subjt:  SFVIQGALERIVGSSI

U5CUI2 Retrotrans_gag domain-containing protein1.7e-2167.53Show/hide
Query:  ARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSFVIQGALERIV
        AR IR YA PMF+ELNPGI  P+I+A  FE+KPVMFQML+TVGQF G+ +E PHLHL+SFL VSDSF IQG  E ++
Subjt:  ARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEYPHLHLKSFLGVSDSFVIQGALERIV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGATCCGCCTGGGGTAAGGTTCGAGCTAGATCCAGAAATTGAAAGGACATTCAGGAGAAGAAGGAGAGAGCAGCGTAGAAACCAAAATTCAATGGCTAACGTGCC
GCATCTCCCGCAGGGTCCAGAAGATCTAGTGAACCCCCAGCAGAATCGTGTGCTGGCCAGAGTCATTCGAGCGTATGCTTTTCCAATGTTTGATGAATTAAATCCAGGGA
TTGCACATCCTCAAATTGAGGCAGAAAATTTTGAAATGAAACCGGTAATGTTTCAGATGTTGAAAACCGTGGGTCAGTTCCATGGTTTGTCATCTGAATACCCTCATTTA
CATCTTAAGTCTTTTCTAGGAGTTAGTGATTCATTTGTAATTCAAGGAGCCTTGGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAACTTATGGGTAT
AAGCAAGCTTGAGAGTATGAATATGGAAGTTCTTGGGAGAATTTTGACAGCATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGATCCGCCTGGGGTAAGGTTCGAGCTAGATCCAGAAATTGAAAGGACATTCAGGAGAAGAAGGAGAGAGCAGCGTAGAAACCAAAATTCAATGGCTAACGTGCC
GCATCTCCCGCAGGGTCCAGAAGATCTAGTGAACCCCCAGCAGAATCGTGTGCTGGCCAGAGTCATTCGAGCGTATGCTTTTCCAATGTTTGATGAATTAAATCCAGGGA
TTGCACATCCTCAAATTGAGGCAGAAAATTTTGAAATGAAACCGGTAATGTTTCAGATGTTGAAAACCGTGGGTCAGTTCCATGGTTTGTCATCTGAATACCCTCATTTA
CATCTTAAGTCTTTTCTAGGAGTTAGTGATTCATTTGTAATTCAAGGAGCCTTGGAACGGATTGTGGGATCCTCAATTGATAGGAATTGGAAAGGAAAACTTATGGGTAT
AAGCAAGCTTGAGAGTATGAATATGGAAGTTCTTGGGAGAATTTTGACAGCATTTTAG
Protein sequenceShow/hide protein sequence
MSDPPGVRFELDPEIERTFRRRRREQRRNQNSMANVPHLPQGPEDLVNPQQNRVLARVIRAYAFPMFDELNPGIAHPQIEAENFEMKPVMFQMLKTVGQFHGLSSEYPHL
HLKSFLGVSDSFVIQGALERIVGSSIDRNWKGKLMGISKLESMNMEVLGRILTAF