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Spg030589 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030589
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:30761754..30763448
RNA-Seq ExpressionSpg030589
SyntenySpg030589
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.6e-0783.33Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS  S++S W E
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0751.39Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+         TW           +F L G++   ++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]9.0e-0848.96Show/hide
Query:  VFGAILDKLVGKFVFIPSG-----------------------------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCD
        +FGAILD+LV   VFI SG                               PL TLSVLRDNDAV EIELPVPDTL TSAESS ++S S    RG D
Subjt:  VFGAILDKLVGKFVFIPSG-----------------------------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCD

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]7.6e-0783.33Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS  S++S W E
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-0751.39Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+         TW           +F L G++   ++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase3.7e-0783.33Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS  S++S W E
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE

A0A5A7VMG9 Reverse transcriptase2.2e-0751.39Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+         TW           +F L G++   ++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI

A0A5D3BNX1 Zf-CCHC domain-containing protein4.3e-0848.96Show/hide
Query:  VFGAILDKLVGKFVFIPSG-----------------------------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCD
        +FGAILD+LV   VFI SG                               PL TLSVLRDNDAV EIELPVPDTL TSAESS ++S S    RG D
Subjt:  VFGAILDKLVGKFVFIPSG-----------------------------YIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCD

A0A5D3DSY7 Putative Retrotransposon protein3.7e-0783.33Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS  S++S W E
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSE

A0A5D3DX39 Reverse transcriptase2.2e-0751.39Show/hide
Query:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI
        PL TLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+         TW           +F L G++   ++
Subjt:  PLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCTGTGTTCGGGGCAATTCTGGACAAATTGGTCGGGAAGTTCGTTTTCATTCCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGC
TGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCACTAGCAGGTGGTCCGAGAGGGGGTGTGACACATGGGCGT
TTCGGATCGCTCCTCTTGCCGTCGCTCGCTTGTTTCAGCTTCGTGGGTTGCTTGAGCACTTTGAGATCGAGTGTTCTTGCGTGAGGATGAGGGTTTTGGAGTGTTCTTCA
TCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCTGTGTTCGGGGCAATTCTGGACAAATTGGTCGGGAAGTTCGTTTTCATTCCTTCAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGC
TGTTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCACTAGCAGGTGGTCCGAGAGGGGGTGTGACACATGGGCGT
TTCGGATCGCTCCTCTTGCCGTCGCTCGCTTGTTTCAGCTTCGTGGGTTGCTTGAGCACTTTGAGATCGAGTGTTCTTGCGTGAGGATGAGGGTTTTGGAGTGTTCTTCA
TCTTCTTGA
Protein sequenceShow/hide protein sequence
MLSVFGAILDKLVGKFVFIPSGYIPLLTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSTSRWSERGCDTWAFRIAPLAVARLFQLRGLLEHFEIECSCVRMRVLECSS
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