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Spg030602 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030602
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold6:34022183..34023787
RNA-Seq ExpressionSpg030602
SyntenySpg030602
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]8.5e-1743.72Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY
        TGFSSK GG LVFSD LSIL          LIRS                                            PRGNR SLQT E+DKT      
Subjt:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY

Query:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL
               PLSTLSVL DND VVSA +APL +R   RW     PT    +  S  LVEIEL VPD LPTSAESS S+ S W+EL
Subjt:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]3.4e-2657.05Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI
        T FSSK G  LVFSD LSIL      +    + PRGNR SLQTGELDKT              LSTLSVL DND VVS            A RAPLHRR 
Subjt:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI

Query:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS
        SKRWLYWACPT R SVML          VEIEL VPDTLPTSAESS S+
Subjt:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]3.4e-2657.05Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI
        T FSSK G  LVFSD LSIL      +    + PRGNR SLQTGELDKT              LSTLSVL DND VVS            A RAPLHRR 
Subjt:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI

Query:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS
        SKRWLYWACPT R SVML          VEIEL VPDTLPTSAESS S+
Subjt:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]8.5e-1743.72Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY
        TGFSSK GG LVFSD LSIL          LIRS                                            PRGNR SLQT E+DKT      
Subjt:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY

Query:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL
               PLSTLSVL DND VVSA +APL +R   RW     PT    +  S  LVEIEL VPD LPTSAESS S+ S W+EL
Subjt:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.2e-1646.01Show/hide
Query:  MQSQPLQNLCST-----------YQPLMFYTGFSSKAGGSLVFSDVLSILGCASLIRS-SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLC
        MQSQPLQNL +T           Y      TGFSSK GG LV SD LSIL    L +   +GPRGNR SLQTGELDKT              LSTLSVL 
Subjt:  MQSQPLQNLCST-----------YQPLMFYTGFSSKAGGSLVFSDVLSILGCASLIRS-SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLC

Query:  DNDVVVSAERAPLHRRISKRWLYWACPTQRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL
        DN+ V                                IEL VPDTLPTSAESSGS+ S W+EL
Subjt:  DNDVVVSAERAPLHRRISKRWLYWACPTQRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.1e-1743.72Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY
        TGFSSK GG LVFSD LSIL          LIRS                                            PRGNR SLQT E+DKT      
Subjt:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY

Query:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL
               PLSTLSVL DND VVSA +APL +R   RW     PT    +  S  LVEIEL VPD LPTSAESS S+ S W+EL
Subjt:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL

A0A5A7VGQ5 Uncharacterized protein1.7e-2657.05Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI
        T FSSK G  LVFSD LSIL      +    + PRGNR SLQTGELDKT              LSTLSVL DND VVS            A RAPLHRR 
Subjt:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI

Query:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS
        SKRWLYWACPT R SVML          VEIEL VPDTLPTSAESS S+
Subjt:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS

A0A5D3BG85 Uncharacterized protein1.7e-2657.05Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI
        T FSSK G  LVFSD LSIL      +    + PRGNR SLQTGELDKT              LSTLSVL DND VVS            A RAPLHRR 
Subjt:  TGFSSKAGGSLVFSDVLSILGCASLIRS--SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVS------------AERAPLHRRI

Query:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS
        SKRWLYWACPT R SVML          VEIEL VPDTLPTSAESS S+
Subjt:  SKRWLYWACPTQRTSVML----------VEIELLVPDTLPTSAESSGSS

A0A5D3BTP3 Reverse transcriptase4.1e-1743.72Show/hide
Query:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY
        TGFSSK GG LVFSD LSIL          LIRS                                            PRGNR SLQT E+DKT      
Subjt:  TGFSSKAGGSLVFSDVLSILGCAS------LIRSSIG-----------------------------------------PRGNRPSLQTGELDKTPEAIWY

Query:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL
               PLSTLSVL DND VVSA +APL +R   RW     PT    +  S  LVEIEL VPD LPTSAESS S+ S W+EL
Subjt:  RVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKRWLYWACPT----QRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL

A0A5D3CJX3 CCHC-type domain-containing protein1.6e-1646.01Show/hide
Query:  MQSQPLQNLCST-----------YQPLMFYTGFSSKAGGSLVFSDVLSILGCASLIRS-SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLC
        MQSQPLQNL +T           Y      TGFSSK GG LV SD LSIL    L +   +GPRGNR SLQTGELDKT              LSTLSVL 
Subjt:  MQSQPLQNLCST-----------YQPLMFYTGFSSKAGGSLVFSDVLSILGCASLIRS-SIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLC

Query:  DNDVVVSAERAPLHRRISKRWLYWACPTQRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL
        DN+ V                                IEL VPDTLPTSAESSGS+ S W+EL
Subjt:  DNDVVVSAERAPLHRRISKRWLYWACPTQRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCATGCAAAGCCAGCCATTGCAGAATCTGTGTTCAACCTATCAACCTCTGATGTTTTACACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGT
TTTGAGCATTCTGGGGTGTGCAAGTTTAATCAGAAGCTCTATTGGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGT
ACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCTGTGACAACGATGTTGTAGTGAGTGCTGAGCGGGCCCCACTACATCGTAGGATTAGTAAACGT
TGGTTGTACTGGGCGTGCCCTACACAACGTACATCGGTCATGTTAGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGATCAAGCTT
CAGTATGTGGGTGGAGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCATGCAAAGCCAGCCATTGCAGAATCTGTGTTCAACCTATCAACCTCTGATGTTTTACACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGT
TTTGAGCATTCTGGGGTGTGCAAGTTTAATCAGAAGCTCTATTGGGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGT
ACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCTGTGACAACGATGTTGTAGTGAGTGCTGAGCGGGCCCCACTACATCGTAGGATTAGTAAACGT
TGGTTGTACTGGGCGTGCCCTACACAACGTACATCGGTCATGTTAGTAGAGATCGAGCTCCTGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCGGATCAAGCTT
CAGTATGTGGGTGGAGTTGTAA
Protein sequenceShow/hide protein sequence
MLMQSQPLQNLCSTYQPLMFYTGFSSKAGGSLVFSDVLSILGCASLIRSSIGPRGNRPSLQTGELDKTPEAIWYRVHTGYIPLSTLSVLCDNDVVVSAERAPLHRRISKR
WLYWACPTQRTSVMLVEIELLVPDTLPTSAESSGSSFSMWVEL