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Spg030608 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg030608
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold6:30755132..30756177
RNA-Seq ExpressionSpg030608
SyntenySpg030608
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.0e-1955Show/hide
Query:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGT+CTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-1654.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FSV  G    +  DDV WLHA+FRAK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-2157.94Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+     +        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.5e-1850Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQ----------EGQQVSLEEDDVRW
        MTEILS RL GT+CTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQ----------EGQQVSLEEDDVRW

Query:  LHAIFRAKLAGGP-GGDVGSVQIE
        LHA+FRAK AGGP GG  GSV ++
Subjt:  LHAIFRAKLAGGP-GGDVGSVQIE

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-2157.94Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+     +        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein4.9e-2055Show/hide
Query:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPG
        MTEILS RLYGT+CTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPG

A0A5A7V9N3 Reverse transcriptase5.1e-1754.95Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FSV  G    +  DDV WLHA+FRAK  GGPGG V +++
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ

A0A5A7VMG9 Reverse transcriptase9.0e-2257.94Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+     +        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.2e-1850Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQ----------EGQQVSLEEDDVRW
        MTEILS RL GT+CTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQ----------EGQQVSLEEDDVRW

Query:  LHAIFRAKLAGGP-GGDVGSVQIE
        LHA+FRAK AGGP GG  GSV ++
Subjt:  LHAIFRAKLAGGP-GGDVGSVQIE

A0A5D3DX39 Reverse transcriptase9.0e-2257.94Show/hide
Query:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA
        MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+     +        + EDDV WLHA+FRAK A
Subjt:  MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLA

Query:  GGPGGDV
        GGPGG V
Subjt:  GGPGGDV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGC
CAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGC
CAGGACTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQIELAEYGPSIVESESS
QD